Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq104896 120 5e-25 seq91022 98.7 1e-18 seq50109 78.8 1e-12 >seq104896 Length=1291 Score = 120 bits (132), Expect = 5e-25 Identities = 164/218 (75%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| |||||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 260 GTAAAAAAGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 317 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 318 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAACATGA--AAGTGGTTCAGCGGT 374 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGT 176 | |||| ||| | | || | ||| ||| || ||||| ||| | | |||||||||||| Sbjct 375 TTACCCAGACATCTTGGTCTAGGAAATACAC--GTTGA-TACTTTGATTGTAGCGCGCGT 431 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 || || |||||||||||||||||||||||||||||||| Sbjct 432 GCAGCTCAGAACATCTAAGGGCATCACAGACCTGTTAT 469 >seq91022 Length=2973 Score = 98.7 bits (108), Expect = 1e-18 Identities = 164/225 (73%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 |||||||||||||||| |||| || || | ||| ||| |||||| |||||| || | Sbjct 741 AAAGGGCAGGGACGTAATCAATGCAAG-TGAATGCCTCAAACTTACTGGGAATT-CCAAG 798 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT-AC 121 || | | |||| || || | | ||||| | || || || | |||| | || || Sbjct 799 TTCAT-ATGAACAGTTTCAGTTCACAATCCCAAACATGA--AAGTGGTTCAGCGGTTTAC 855 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTG-TAGCGCGCGTGCGG 180 | ||| || |||| | || ||| || ||||| || | | | |||||||||||| | Sbjct 856 CAGGATCTCTCGGTCTAGAAAATACAC--GTTGA-TATTTGAATTCTAGCGCGCGTGCAG 912 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||| |||||||||||||||||||| ||||||||| ||||| || Sbjct 913 CCCAGGACATCTAAGGGCATCACAGAGCTGTTATTG-CTCAATCT 956 >seq50109 Length=5511 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/106 (79%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | || || | || ||||| |||| | || |||| || |||| Sbjct 849 TTACCCGGACCTCTCGGTCTAG--GAAATACACGTTG-ATACTTCCATTGTACCGTGCGT 905 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || ||||| | ||||||| |||||||||| |||||| || ||||| Sbjct 906 GCAACCCAGTATATCTAAGAGCATCACAGAACTGTTACTG-CTCAA 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750744058715