Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq53564 140 6e-31 seq3973 123 5e-26 >seq53564 Length=5556 Score = 140 bits (154), Expect = 6e-31 Identities = 188/252 (75%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT----TTGCTCGAATACATTA-GCA 129 ||| |||||| ||||||||||| | ||||||||| | ||| |||||| | ||| Sbjct 3937 TTAATTTGAACAAATTAGAGTGCTTAAAGCAGGCTCAAAATGGCT-GAATACTCTGTGCA 3995 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAAT 187 |||||||||| |||| ||| | | |||||| ||| ||||||| ||| | | ||||| Sbjct 3996 TGGAATAATAAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTTAGATCAAGAGGTAAT 4054 Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 4055 GATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGAC 4114 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| ||||||||||||||||| |||| Sbjct 4115 CGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAAC 4173 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 4174 GAAAGTTAGAGG 4185 >seq3973 Length=8888 Score = 123 bits (136), Expect = 5e-26 Identities = 183/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| ||| ||||| | |||| Sbjct 3734 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTCAAAATGCCTGAATATTCTGTGCAT 3675 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 |||||||| |||| ||| | | |||||| ||| ||||||| ||| | | |||||| Sbjct 3674 GGAATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTTAGATCAAGAGGTAATG 3616 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | ||||||||||||| ||| Sbjct 3615 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCGCGGACC 3556 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| |||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 3555 GTCGTAAGACGAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 3497 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 3496 AAAGTTAGAGG 3486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913622186048