Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq53564 167 4e-39 seq91022 86.0 1e-14 seq104896 82.4 1e-13 seq15391 73.4 6e-11 >seq53564 Length=5556 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 4531 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 4472 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 4471 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 4432 >seq91022 Length=2973 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 |||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||| || Sbjct 899 TAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGAGCTGTTATTG-CTCAATCTC 957 Query 82 CCATTGGCTGGAAGCCAATAGTCC 105 | ||||| || || | | |||| Sbjct 958 ACTATGGCTAGATGCAATTTGTCC 981 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || |||||| ||| ||||| | | || |||||||||||||| |||||||||||||||||| Sbjct 1124 GTTTCGTTCATTAGCGGAACTTATCAAACAAATCACTCCACGAACTAAGAACGGCCATGC 1183 >seq104896 Length=1291 Score = 82.4 bits (90), Expect = 1e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 420 TGTAGCGCGCGTGCAGCTCAGAACATCTAAGGGCATCACAGACCTGTTAT 469 >seq15391 Length=1241 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || |||||| ||| ||||| | | || |||||||||||||| |||||||||||||||||| Sbjct 856 GTTTCGTTCATTAGCGGAACTTATCAAACAAATCACTCCACGAACTAAGAACGGCCATGC 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795469236681