Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq26355 351 2e-94 seq135053 187 5e-45 >seq26355 Length=15530 Score = 351 bits (388), Expect = 2e-94 Identities = 292/353 (83%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||||||||||| |||| |||||||||| || | ||| Sbjct 73 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGTATTG-CTGGATCAGGGTTCCCCCC 130 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 131 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 190 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||| ||| || ||||||||||||||| ||| ||||| || Sbjct 191 TGTGGCTGATCATCCTCTCAGAACAGCTAAAGATCGTCGCCTTGGTAGGCCTTTACCCCA 250 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | ||||||||||| ||||| ||| |||||| ||||| ||| Sbjct 251 CCAACTAGCTAATCTTCCATAGGCTCATCTTGTAGCGAGAGGTCCGAAGATCCCCCTCTT 310 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | || ||| | || |||||||||| | |||| |||||||| ||||| || Sbjct 311 TAAACCTTAGTCCACATCCGGTATTAGCCACTCTTTCGAGTAGTTATCCCAAACTACAAG 370 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCAAGAGAAGCAAGCT 352 | ||||||||| | |||||||||||||||||| ||| || || |||||||| Sbjct 371 GTAGATTCCTATGTATTACTCACCCGTCCGCCACTCGCCATCAGGAGCAAGCT 423 >seq135053 Length=5356 Score = 187 bits (206), Expect = 5e-45 Identities = 160/194 (82%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 2 TTTACAATCCG-AAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || ||| || |||| | ||||||| || ||||||||||||| | ||| Sbjct 583 TTTACAACCCATAAGGCCGTCTTCCTT-CACGCGGGAT-GGCTGGATCAGGCGCTAACCC 526 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 525 ATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 466 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||| |||||||| || || |||| |||||||||| |||| ||||| | Sbjct 465 TGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCATCGCCTTGGTAAGCCTTTACCCTA 406 Query 181 CCAACTAGCTAATC 194 |||||||||||||| Sbjct 405 CCAACTAGCTAATC 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070151861280