Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq26355 416 7e-114 seq135053 199 1e-48 seq23700 80.6 7e-13 >seq26355 Length=15530 Score = 416 bits (460), Expect = 7e-114 Identities = 344/416 (83%), Gaps = 8/416 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| |||||||| || |||| |||||| || | || Sbjct 70 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGTATTGCTGGATCAGGGTTCCCCC 129 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 130 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 189 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| ||||||||||||| |||||| ||||||||||| ||| |||| ||||||| Sbjct 190 GTGTGGCTGATCATCCTCTCAGAACAGCTAAAGATCGTCGCCTTGGTAGGCCTTTACCCC 249 Query 181 GCCAACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCT 238 |||||||||||||| ||| | || ||||| ||| |||||| |||||| ||||||| Sbjct 250 ACCAACTAGCTAATCTTCCA--TAGGCTCATCTTGTAGCGAGAGGTCCGAAGATCCCCCT 307 Query 239 CTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCAT 298 |||| | | | | || ||||||||||||| |||| ||| |||||||| | | Sbjct 308 CTTTAAACCTTAGTCCACATCCGGTATTAGCCACTCTTTCGAGTAGTTATCCCAAACTAC 367 Query 299 CAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGC 358 ||| || |||| | ||||||||||||||||||||||| || | || |||||||| | Sbjct 368 AAGGTAGATTCCTATGTATTACTCACCCGTCCGCCACTCGCCATC--AGGAGCAAGCTCC 425 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || | ||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 426 --CATGCTGCCGTTCGACTTGCATGTGTTAAGCATACCGCCAGCGTTCAATCTGAG 479 >seq135053 Length=5356 Score = 199 bits (220), Expect = 1e-48 Identities = 160/192 (83%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCG-AAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||||| ||||| | ||||||| ||||||| ||||||| ||||| Sbjct 583 TTTACAACCCATAAGGCCGTCTTCCTTCACGCGGGATGGCTGGATCAGGCGCTAACCCAT 524 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 523 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 464 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| |||| |||||| ||| ||| |||||| || Sbjct 463 TGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCATCGCCTTGGTAAGCCTTTACCCTACC 404 Query 184 AACTAGCTAATC 195 |||||||||||| Sbjct 403 AACTAGCTAATC 392 >seq23700 Length=2615 Score = 80.6 bits (88), Expect = 7e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 2615 TGCTACCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCAATCTGAG 2564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220292570176