Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq135053 284 4e-74 seq26355 228 2e-57 >seq135053 Length=5356 Score = 284 bits (314), Expect = 4e-74 Identities = 363/501 (72%), Gaps = 23/501 (5%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||| ||||| ||||||| ||||||||| | ||| | |||| | | ||||| | | Sbjct 247 AGACCGGCGCACGGGTGCGTAACGCGTATGCAACTTACCCTTTCGAGTGGGATAGCCCAG 306 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 ||| | |||||| | |||||| || | | |||| | | | | |||| | Sbjct 307 GGAAGCTTGGATTAATACTACATAATAATATTAT-TGGCATCGATAATATTTGAAAGATT 365 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 || | ||||||| | |||| |||||||||||||||| ||||| ||||||||||| Sbjct 366 TATCGCGAAAGGATAGGCATGCGTAAGATTAGCTAGTTGGTAGGGTAAAGGCTTACCAAG 425 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 |||| |||| ||| | ||||||||||||| | ||||| ||| |||||||||||| || Sbjct 426 GCGATGATCTTTAGGGGGCCTGAGAGGGTGAACCCCCACACTGGTACTGAGACACGGACC 485 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | |||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||| Sbjct 486 AGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGGTTAGCGCCTGATCCAGC 545 Query 321 AACGCCGCGTGAGCGATGAAGGCCTT-CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA- 378 | |||||||| || || |||||| |||| ||||| ||| | | ||||| | | Sbjct 546 CATCCCGCGTGAAGGAAGACGGCCTTATGGGTTGTAAACTTCTTTTTTATAGGAATAAAC 605 Query 379 -------------------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 ||| |||||| | || |||| |||||||||| |||||| Sbjct 606 CTACTTACGAGTTGAGTAGTTGAAGGTACTATAAGAATAAGCACCGGCTAACTCCGTGCC 665 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 |||||||||||||||||| |||| || ||||||||||||| ||| | ||| |||||||| Sbjct 666 AGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 724 Query 480 GCGTAGGTGGTTTCTTAAGTC 500 |||||| || || |||||| Sbjct 725 CCGTAGGCGGATTAATAAGTC 745 >seq26355 Length=15530 Score = 228 bits (252), Expect = 2e-57 Identities = 168/196 (86%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| ||||| ||| |||||||||||||||| |||| | ||||||| Sbjct 264 GATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCTTTAGCTGTTCTGAGAG 205 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 204 GATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 145 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||| |||||||| || |||||| |||||| ||||||| | || ||||||||| Sbjct 144 GAATATTGGACAATGGGGGGAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTT 85 Query 347 CGGGTCGTAAAGCTCT 362 ||||| ||||||| || Sbjct 84 CGGGTTGTAAAGCACT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495018122624