Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq135053 383 6e-104 >seq135053 Length=5356 Score = 383 bits (424), Expect = 6e-104 Identities = 433/573 (76%), Gaps = 23/573 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG--ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| | |||| ||| ||||| ||||||| ||||||||||||| Sbjct 2794 CGAGTCTTAATAGGGCGTTATAGTCAGTGGTATTAGACGCGAAACCTAGTGATCTACCCA 2853 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| | |||||||| |||||| ||||||| | | |||||||| Sbjct 2854 TGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACCGAACCGGTTGACGTTGAAAAG 2913 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 2914 TCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTACT 2973 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC-----AAGTATCACCATCGGGGGTAGAGC-ACT 233 | |||||| |||||||| || | |||||| || | |||||||| ||| Sbjct 2974 CCCCGAAATGCATTTAGGTGCAGCGTATATATAAGTAT----ATTAGAGGTAGAGCTACT 3029 Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--GCATC 291 | | ||| | |||| | | | | |||||| | | |||||||||||||| | || Sbjct 3030 GAT-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCTAGTATA 3088 Query 292 AGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 |||| || ||||||||||||||||||||||||| || |||||||| ||||| | Sbjct 3089 TGTTTATATGC---AGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACC 3145 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 ||||| ||||||||||| ||| |||| |||||||| || |||| || ||||||| Sbjct 3146 CGGACCATCAGCTAAGGTCCCTAAATATATGCTAAGTTGAATAAACGTGGTTGGATTGCT 3205 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| Sbjct 3206 TAGACAGCTAGGATGTTAGCTTGGAAGCAGCTATTCATTTAACGAGTGCGTAACAGCTCA 3265 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 ||||||||| || ||| ||||||||| ||||| | |||| ||||||||| ||| Sbjct 3266 CTAGTCGAGCGATCTGGCATGGATAATACTCGGGCA-TAAGCATATTACCGAAGCTATGG 3324 Query 532 ----GATCATTTATATGATCGGTAGGGGAGCAT 560 | || || || | ||||||||||||| Sbjct 3325 ATTAGTACAATTGTACTAGTGGTAGGGGAGCAT 3357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686687112704