Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq85052 129 2e-27 seq43706 129 2e-27 seq25901 116 1e-23 seq53564 95.1 4e-17 seq51489 86.0 2e-14 >seq85052 Length=2053 Score = 129 bits (142), Expect = 2e-27 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1254 TTACTCCCGCCGTTGACCCGCGCTTATTTGAATTTCTTCACGTTGACATTCAGAGCACTG 1195 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||| ||||||| Sbjct 1194 GGCAGAAATCACATTGTGTCAACA 1171 >seq43706 Length=6832 Score = 129 bits (142), Expect = 2e-27 Identities = 132/170 (78%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||| ||||| | | ||| |||||| |||||||| | | ||||| ||||||||| ||| Sbjct 2879 AGAT-GGGACGGAGAGAACCTCGTTTATCCATTCCTATGTTTCACTTATTAGATGATGAG 2821 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||| | || | | |||||| | || ||| ||||||| | || |||||||| |||| Sbjct 2820 GCATTGGACTGCAT-AAGAGATCCTTAATTAATCCCGCCATGTATCCGCGCTTATATGAA 2762 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||| |||| ||||||| | || ||||||||||||| ||||| Sbjct 2761 TTTCTTCACGTTGAGATTCAGAACGTGGGTCAGAAATCACATTTTGTCAA 2712 >seq25901 Length=3447 Score = 116 bits (128), Expect = 1e-23 Identities = 124/165 (75%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||| ||||| |||| |||||||| || | | || ||||||||| ||| Sbjct 1797 GGGACAGCGGGAACCTCGGCTATCCATTCCTGTGTTGCGCTTGATAGATGACGCACAATT 1856 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 || | ||||||||||||| ||||||||||| || |||| |||||||||| Sbjct 1857 AAACTGC--------AGTCATAGTTACTTCCGCCGTTTACTCGTGCTTATTTGAATTTCT 1908 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||| ||||||||||||||||||||| || |||||||| ||||| Sbjct 1909 GCACGTTGACATTCAGAGCACTGGGCGGATATCACATTCTGTCAA 1953 >seq53564 Length=5556 Score = 95.1 bits (104), Expect = 4e-17 Identities = 144/204 (71%), Gaps = 17/204 (8%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA 231 ||||| ||| || | ||||||| |||| ||||| ||| |||||||||| | | || Sbjct 989 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAATGGTATTTCATTGTTGATGA 930 Query 232 AA--CGG-----------CTCCCACTTATTCTACACCTCTCAAG--TCATTTCACAAAGT 276 || ||| || | ||||||||||||||| | | | || || | | | Sbjct 929 AAAACGGAAGTTTAACATCTTCGACTTATTCTACACCTGTTATGGTTCCTTACGCT--GC 872 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 |||| ||||| |||||||| |||||| | |||||||||| ||| || || | |||| Sbjct 871 CGGATGAGAGTAAAGCTCAATAGGGTCATATTTCCCCGCTAATTAGTCCCTGCTCTTTCC 812 Query 337 CTTGGCTGTGGTTTCGCTAGATAG 360 || |||| ||||||||||| |||| Sbjct 811 CTAGGCTATGGTTTCGCTAAATAG 788 >seq51489 Length=12187 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||| || || ||||| |||||| | | |||| | || |||| ||||| ||| ||||| Sbjct 5155 AAGGGACACAAAGTTAGTCCCGCAGGTAACCCACACTACTTTGAGTTTCTCCACGTTGAC 5096 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | |||||| |||||||| ||||||||||| ||||||| Sbjct 5095 AATCAGAGTACTGGGCATAAATCACATTGTGTCAACA 5059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632380898848