Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq53564 208 2e-51 seq4398 159 1e-36 seq60468 118 3e-24 >seq53564 Length=5556 Score = 208 bits (230), Expect = 2e-51 Identities = 296/404 (73%), Gaps = 18/404 (4%) Strand=Plus/Minus Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 |||||||||| |||||| |||||||||| | ||||||| | |||||| ||||||||| Sbjct 3572 GCGCCTGCTGTGTTCCTTTGATGTGGTAGACATTTCTCAAACATCCTCTCTGGAATCGAA 3513 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 |||| | |||||||||| ||||| |||||||||| || || | |||||| ||||| Sbjct 3512 CCCTGAATCCCCGTTACTCGTTGCAACCATGGTAGTCCTAAATACAACCATC---AGTTG 3456 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTA- 265 ||||| |||| ||||||| || | || ||| ||| |||| ||| || | |||| Sbjct 3455 ATAGGACAGACATTTGAAAGATCTGACGTCGGTACAACACCATACGA-TCTGAATGTTAT 3397 Query 266 TTATGAATC-ACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCC 323 |||| || ||||| | | | | || ||| |||| ||||||||| | || Sbjct 3396 TTATAGTTCAACCAAAAAACGGTCTTTGATCGCTGGGTTTTAGTCTAATAAAAATACATG 3337 Query 324 TTCCGAA--GTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 |||| || ||| | |||| || |||| ||||||||||| | ||||||| ||| || Sbjct 3336 TTCCAAAACGTCCGCGTTTATATTGCATATATTAGCTCTATACTTACCACACTTA---AT 3280 Query 380 GTAGTAA-GGT--ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 ||||| || || ||| |||||| ||||||||| | ||||||| || || |||||| Sbjct 3279 TAAGTAACTGTTAACGATCTTATAAACCATAACTGATATCATGAGCCGTTTGCGGTTTCA 3220 Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 || | || || || |||| ||||| |||||||||||||||| Sbjct 3219 CT-TTTAATTTATTTGCACTTGGACATACATGGCTTAATCTTTG 3177 >seq4398 Length=1588 Score = 159 bits (176), Expect = 1e-36 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCG-GGATTGGGTAATTTGCGCGCCT 92 |||||| ||||| |||||| || ||||||| | ||| || ||||||| |||| || Sbjct 1573 CTGTATGGTTATTTTTTGTCATTAACTCCCCGAACTGAGGAGTGTGTAATTTACGCGTCT 1514 Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA 152 |||||||||||| ||| ||||| ||||||||| | ||| ||||||||||| ||| | | | Sbjct 1513 GCTGCCTTCCTTCGATCTGGTATCCGTTTCTCGGACTCTCTCTCCGGAATTGAATCATGA 1454 Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||||||||||||||||| |||||||||| | || |||||| || ||| ||| | Sbjct 1453 TTCCCCGTTACCCGTTGCAACCATGGTAGTTCTAGATATAACCATCAAATGTTCATAAAG 1394 Query 213 CAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCAT 249 |||| |||| || || | ||| ||| |||| |||| Sbjct 1393 CAGACATTT-AAAGATCTGTCGTCGGTACAAGACCAT 1358 >seq60468 Length=4096 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 ||| |||||||||| | |||||||||||||| ||| |||||||||| || || |||| Sbjct 1796 TCCAGAATCGAACCGTTATTCCCCGTTACCCATTGCAACCATGGTAGTCCTAGATACTAC 1855 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 |||| |||||||||||| |||| ||||||| || | ||||||| |||| |||| |||| Sbjct 1856 CATCAAAAGTTGATAGGACAGATATTTGAAAGATCTGTCGCCGGTACAAGACCATACGAT 1915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507796055296