Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq172366 259 4e-64 >seq172366 Length=6938 Score = 259 bits (286), Expect = 4e-64 Identities = 559/836 (67%), Gaps = 0/836 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| || || |||| ||| || ||||| || |||||||||||||| || || | | Sbjct 4287 ACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAA 4228 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || || |||||||| ||||||| ||| ||||| ||||| || | ||| | ||| ||| Sbjct 4227 TATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTA 4168 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 || || | ||||| | |||||| || | ||| || || || || || |||||||| | Sbjct 4167 CTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTGTGCT 4108 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 |||||||| || ||| || | | || || | | | || | |||| | Sbjct 4107 TCAATGATAGCAAACCACAGTGACTGAGCTTTAATTTTTCTATTAGCACGGCCTTCTTTT 4048 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 || || | ||| || | | || || ||| ||||| | ||| || | || || Sbjct 4047 TCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCAT 3988 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 || || |||||||| || ||||| || ||||| |||||| || |||||| |||||| Sbjct 3987 TTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATAAAAAGATCA 3928 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTG 66412 || |||||||| ||||| || | || || || | || || || | || |||||| Sbjct 3927 GGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTT 3868 Query 66413 CGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAG 66472 |||||| | ||||| || || || | |||||| || |||| || || ||||||| | Sbjct 3867 TTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCGAACGCG 3808 Query 66473 CCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAAC 66532 || | ||| |||||||||||||| || || || || ||||| || || || | |||| Sbjct 3807 CCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAAACTCTCAAC 3748 Query 66533 ATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGT 66592 || || || | || || ||| | ||||| || ||| || | | |||| || || Sbjct 3747 ATAGGCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGATGTTCCTTTAGCTCGA 3688 Query 66593 ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC 66652 ||| |||||||| | ||||| || || || | ||||| || ||||| | | Sbjct 3687 ATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATCATTGCACATTGTTCT 3628 Query 66653 ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTA 66712 || | ||| || || |||||||| || | || || || | | || || Sbjct 3627 ACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAAACAAGATGAC 3568 Query 66713 AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGG 66772 ||||| || | ||| || || | || | || || | ||| || |||||||| | Sbjct 3567 AGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTT 3508 Query 66773 CGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 ||| | ||||||| || || ||| ||||||| |||| ||| || || || || Sbjct 3507 TCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTCTTCACCGTGTATTCC 3452 Score = 161 bits (178), Expect = 8e-35 Identities = 317/466 (68%), Gaps = 2/466 (0%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || |||||||| || | |||||| | | ||| ||||| || || Sbjct 5182 ATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCAGT 5123 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || || ||||| ||||||||||||||| || || | | ||| |||| || || || Sbjct 5122 TTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGGTTC 5063 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || || ||||||||||| ||||| ||| || || | ||| |||||||| Sbjct 5062 TGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGCCAT 5003 Query 65257 GTCAATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | || | | || || ||||| || |||||||| | | || | Sbjct 5002 TTTAATTGT-TGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATGGGTT 4944 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 | ||||| || |||| || | |||||||||| || ||||| |||| ||| Sbjct 4943 TAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTCATAT 4884 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| || | | ||| |||||| | | | |||| |||| | ||||| | Sbjct 4883 TGTCATCCCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACAACTTGAA 4824 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || | ||||| | || || || || || ||||||||||||||| Sbjct 4823 ATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGATTCAT 4764 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 | || ||||||||||| || |||||||| || ||||| ||||| || Sbjct 4763 TATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAAC 4718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396732655090640