Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq62589 163 9e-36 seq165453 80.6 8e-11 >seq62589 Length=22093 Score = 163 bits (180), Expect = 9e-36 Identities = 432/650 (66%), Gaps = 30/650 (5%) Strand=Plus/Plus Query 2185 CCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATC 2244 |||||||| |||||| |||| ||||||||| || ||||| |||||||| ||| | Sbjct 709 CCAACATTTTCAGAAGCTGTTCGAGCGGGTGCTGAGATATTCCATGCGCTTAAAAAAGTA 768 Query 2245 CTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTC 2304 | || || ||| ||||| ||| | ||||| || ||||||||||| || || ||| Sbjct 769 TTGAATGAGCGTAAACTTGCAACTACAGTAGGCGATGAAGGTGGTTTTGCGCCAAATTTA 828 Query 2305 GACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTA 2364 | |||||| | ||||| || || || || || ||| || |||| | Sbjct 829 TCTTCTAATGAAGAAGCGCTTGAAGTGATAATGGCTGCGATTAAAAATGCAGGCTATGAA 888 Query 2365 CCAGGTAAAGACGTATTTATCGGACTTGACTGT-GCATCATCTGAATTCTACGATGCAGA 2423 | || ||||| | || | || ||||| ||| |||||||| ||||| || | ||| Sbjct 889 GCTGGGAAAGATATTTTCTTAGGGCTTGA-TGTCGCATCATCAGAATTTTATAA---AGA 944 Query 2424 ACGTAAAGTTTACGACTACACTA-AATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTG 2482 | ||| || ||| || ||| |||| | || | | | ||| |||||| Sbjct 945 TGGCAAA---TATCACT----TAGAATCTGAAAATAAA-----TCATTTGCGT-CTGCTG 991 Query 2483 CAGAACAAATCG---ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCG 2539 || ||| | | | | | || | || | | || || |||||||| || | Sbjct 992 ------AATTCGCTGATTTCTTAGCTGACTGGGCTGAGCGTTATCCTATCATCACAATAG 1045 Query 2540 AAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTG 2599 ||||||||||||| || ||| ||||| ||||||||| | | || || |||| | Sbjct 1046 AAGATGGTATGGATGAGTCCGATTGGGAAGGTTGGAAAATTTTAACAGATAAAATTGGAG 1105 Query 2600 GTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAA-A 2658 |||||||||||| || ||||| || | || ||||| || || | ||||||| | Sbjct 1106 ATAAAGTTCAATTAGTCGGTGATGATCTATTTGTAACGAATCCTAAG-ATATTGAAAAGA 1164 Query 2659 GGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTG 2718 ||||| | ||| | | ||||||||| || | || ||| |||| ||||||||||| ||| Sbjct 1165 GGTATCGACGAAAAAGTTGCTAACTCTATTTTGATTAAATTTAATCAAATCGGTACGTTG 1224 Query 2719 ACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCA 2778 || ||||| || || || || ||||||| | || || | || || | || || || Sbjct 1225 ACAGAAACGTTAGAAGCGATAAAAATGGCTGATGATGCGGATTATACGTCTGTTGTTTCT 1284 Query 2779 CACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGC 2828 || ||||| || ||||| ||| ||||| || ||| | ||||||| Sbjct 1285 CATCGTTCTGGAGAAACGTCTGATGTTACAATTGCAGATTTATCAGTTGC 1334 >seq165453 Length=1207 Score = 80.6 bits (88), Expect = 8e-11 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 2773 GTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACT 2832 ||||| || ||||| |||||||| || |||||| ||||||||| | | |||| || Sbjct 1151 GTATCTCATCGTTCTGGTGAAACCGAGGATTCATTCATCGCTGATTTGGTCGTTGGT-CT 1093 Query 2833 AACG-CTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAA 2891 | || |||| ||||||||||| ||| || | ||| | || || | ||||||||||| Sbjct 1092 ATCGACTGGCCAAATTAAGACTGGTGCACCATGCCGTTCCGAGCGATTGGCTAAATACAA 1033 Query 2892 CCAATTGCTTCGTATCGAAGA 2912 |||| | | ||||| || || Sbjct 1032 CCAAATCTTACGTATTGAGGA 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155718948532644