Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_025707.1 Length=5749 Score E Sequences producing significant alignments: (Bits) Value seq90316 147 8e-32 seq37585 89.7 2e-14 >seq90316 Length=3982 Score = 147 bits (162), Expect = 8e-32 Identities = 273/398 (69%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 3858 TGGTCTTGGGACCAGATTCTCCATGAAAACACTGCCTCTAAACAACTTCTTTGTCTTTGT 3917 ||| | ||||| |||||| | || || | || ||||||| ||||| | |||| Sbjct 3586 TGGACGTGGGAACAGATTGTTCACGAGTCCTATGAGTCTAAACTTCTTCTCGCTGATTGT 3645 Query 3918 TCATGGGGCAAAAAATACCATGAAGGTCGACATGCGGAAACCGCCAGGCGTCAAAT-AGC 3976 || ||||| |||| ||| | ||| || ||| ||| | | || ||| || ||| Sbjct 3646 TCTTGGGGTTCTAAATTCCACGCTGGTAGATTTGCTGAAGCACCAAGACGTATCATTAGC 3705 Query 3977 ACACGTTGTTATCATGTATGGGGCTGGTGGTACTGGAAAAACCACTCTAGCCCATTCATG 4036 | | || | |||||||| || || || ||||| || ||||||||||| ||||| ||| Sbjct 3706 A-ATGTCATCATCATGTACGGAGCGGGCGGTACCGGTAAAACCACTCTCGCCCAAAAATG 3764 Query 4037 GGATATTATTGAAGGTGAAGATAAACAGGAACGCTACTACCGTCGCAATCCTGATGACGG 4096 |||| || | ||||||| | |||||||| |||||||| || || ||| || || Sbjct 3765 GGATGCGCGCGACGATGAAGATTATCAGGAACGTTACTACCGGCGTAACTATGACGATGG 3824 Query 4097 GGCATTTTGGGGCGGAGGCAAAACTGCTTACAAAGGTCAAAGAATTGTCCATTTGGAAGA 4156 ||||||||||| ||| || | ||||||| |||| || | | || | ||||| Sbjct 3825 AAAGTTTTGGGGCGGCGGCCGTACCGGATACAAAGCTCAACGATGTATACACCTCGAAGA 3884 Query 4157 ATTTTGTGGACAAGAACAATTTTCGAGATTCAAAGAAATTTGTGATCTCGGAAAAGAAGG 4216 ||||| || ||||| || || | ||||||||| | |||||| | || ||| || Sbjct 3885 GTTTTGCGGCCAAGAGCACGCCTCCAAGTTCAAAGAACTCTGTGATTTGGGTAAACGCGG 3944 Query 4217 TCCACCTGTCAATATTAAACAAGGCGGAAGCCAGTTGA 4254 |||||| ||||| | ||| | || || | |||||| Sbjct 3945 TCCACCCGTCAACGTCAAAAACGGTGGTATTGAGTTGA 3982 >seq37585 Length=4841 Score = 89.7 bits (98), Expect = 2e-14 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 4254 AATCATGACACCGTCATCATCACTTCAAATCACCACCCAGCTTCATGGTATCATAAAATC 4313 |||||||| || | ||| |||| |||||| |||||||| |||||||| ||| || Sbjct 4817 AATCATGAGACTATTATCCTCACATCAAATGTTCACCCAGCGGGATGGTATCGTAATATG 4758 Query 4314 TGGGAGAGTGAACCAAAACAATTTCATCCATTCTGGAGAAGGATTACACAAGTTTGGTTT 4373 ||| | || | |||||||| ||||| || |||||||| |||| |||| ||| Sbjct 4757 TGGCAACAAGATGCCAAACAATTCCATCCCTTTTGGAGAAGAGTTACTAAAGTACTCTTT 4698 Query 4374 TTTCCGTCCCATCGTCCCGATGGATCACTTAACATCCCAGACCAAGATAACCCTCCGTTT 4433 |||||||| | ||| ||| ||| | || || || || || |||||||||| | | Sbjct 4697 TTTCCGTCTGAACGTAACGACGGACTTCCAAATATTCCGGATGAAAATAACCCTCCATAT 4638 Query 4434 TATCTTGATCAAAC 4447 | |||||||| Sbjct 4637 TTCGAAGATCAAAC 4624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18250321524010