Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029577.1 Length=3003 Score E Sequences producing significant alignments: (Bits) Value seq171168 181 2e-42 >seq171168 Length=2613 Score = 181 bits (200), Expect = 2e-42 Identities = 265/370 (72%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 1610 TAAAGCAGCCATTGTTTCGGCATCACATTCAGGATACCACTGTTCAGGGGGAATGTTGCT 1669 ||||||| | | ||||| ||| | ||||| ||||| || ||| | ||| || Sbjct 257 TAAAGCACCTAACGTTTCATTATCTAAATCAGGGTACCAGAGTCGGGGGTCGAGGTTACT 316 Query 1670 CGTGATCCAGATCTTCTTTGCAGATAAGGGTACCGAGCTCCCCTTGACCTT--CCAAAAC 1727 |||| |||||| | |||||| | | ||||| || || |||| | | || Sbjct 317 AGTGACCCAGATGGTTGTTGCAGCGAGGACAACCGACGAACCTTTAACCTCGACGACCAC 376 Query 1728 AGGGTATCGGTCGAACCAACGAAGGACATGGGCGATGTCGATTCCTCCACGAAATTCATC 1787 ||| ||||| |||||||| || | || |||||||| |||||||| || ||||| ||||| Sbjct 377 AGGATATCGATCGAACCATCGCAAGAGATGGGCGACATCGATTCCACCTCGAAACTCATC 436 Query 1788 CAACACAACGTGTTCTTGACCTCGGTACCCATCCCAAAATTTAGACCGCGGATCTTTAGG 1847 | ||||| || | ||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct 437 GATAACAACATGCGCGTGACCTCGGTAACCATCCCAAAATTTGGACCGAGGATCCTTAGG 496 Query 1848 GTAAGCATTAACTCCGGACTCTTCCCAGGCTCGTCGAGACTTGCCGCTGCCACTGCGACC 1907 | |||| | | |||| ||| ||||||||||| || || |||||||| ||| || || Sbjct 497 GAAAGCGTCGAGACCGGCCTCGTCCCAGGCTCGACGTGATTTGCCGCTCCCAGTGACGCC 556 Query 1908 CCAGTAACAC-ACAACTTCTCGTTCCATTGGATCAGCTTG---CATATGATCGCAAGCAA 1963 |||| ||||| ||| ||||| ||| ||| | | |||||| ||| ||||| Sbjct 557 CCAG-AACACGTTAACACGGCGTTCGATT---CCAGTTGGGACCATATGGTCGACAGCAA 612 Query 1964 TGCGCTTGAG 1973 |||| ||||| Sbjct 613 TGCGTTTGAG 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9479690984120