Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029603.1 Length=1131 Score E Sequences producing significant alignments: (Bits) Value seq170258 82.4 5e-13 >seq170258 Length=2091 Score = 82.4 bits (90), Expect = 5e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 573 AATAAGTGGTGGGATGGCTATCAAAATGA--ACCAGGTGTGATTATTAATGATGTAGGCA 630 ||||||||||||||||| || |||||||| | | || | | ||| ||||| | | | Sbjct 978 AATAAGTGGTGGGATGGGTACCAAAATGAGGATTACGTTT--TGATTGATGATTTGGATA 1035 Query 631 AGGAACACTCAGTGCTAGGACATCACTTTAAACTATGGGGTGAGCACAGAC-CTTTCATA 689 |||| ||| |||| ||||| || ||| ||||| ||| || | || |||| || Sbjct 1036 CAAAACATGAAGTTTTAGGTCATCATTTGAAAATATGGTCTGA-CAGATACTCTTTTATT 1094 Query 690 GCAGAGACTAAGGGTGGTGCTATTCATATTAGACCTCAGCGTGTGATTATAACTAGTCAA 749 || || | ||| || || |||| |||||||| || || | ||| | ||| ||| Sbjct 1095 GCCGAAATTAAAGGAGGCGCTAAACATATTAGGCCAAAGAAATTAATTGTGACTTCACAA 1154 Query 750 TATTCGCTTACTCAGATTTGGGAGGATGAAGAGACTAGGGATGCACT 796 || || || ||||||||||| ||| | ||||| || || || || Sbjct 1155 TACTCTATTGATCAGATTTGGGCTGATCAGGAGACAAGAGAGGCGCT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3507353222166