Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029607.1 Length=2862 Score E Sequences producing significant alignments: (Bits) Value seq171168 178 2e-41 seq170627 105 1e-19 >seq171168 Length=2613 Score = 178 bits (196), Expect = 2e-41 Identities = 226/302 (75%), Gaps = 13/302 (4%) Strand=Plus/Plus Query 1351 GTTTCATCGTCCAGTTCAGGGTACCAAGATTCGGGAGGTAGA--TTACTGGTGATCCAGA 1408 ||||||| || | ||||||||||| || ||||| ||| || ||||| |||| ||||| Sbjct 270 GTTTCATTATCTAAATCAGGGTACCA-GAGTCGGG-GGTCGAGGTTACTAGTGACCCAGA 327 Query 1409 TCTTGGTTGCCTTAAGTG-GTACG-CTGCTG--CCTTTGACCTCTACCATAACTGGGTAG 1464 | | ||||| || | | || | | | ||||| ||||| || | || || || Sbjct 328 TGGTTGTTGC----AGCGAGGACAACCGACGAACCTTTAACCTCGACGACCACAGGATAT 383 Query 1465 CGGTCGAACCAGCGAAGGACGTGGGCGATGTCGATTCCTCCTCGAAATTCATCCAAAACA 1524 || |||||||| || | || ||||||| |||||||| |||||||| ||||| | |||| Sbjct 384 CGATCGAACCATCGCAAGAGATGGGCGACATCGATTCCACCTCGAAACTCATCGATAACA 443 Query 1525 ACGTGCTCCTGACCTCGGTATCCATCCCAAAACTTAGACCTCGGATCTTTAGGGTAAGCG 1584 || ||| | ||||||||||| ||||||||||| || |||| ||||| |||||| ||||| Sbjct 444 ACATGCGCGTGACCTCGGTAACCATCCCAAAATTTGGACCGAGGATCCTTAGGGAAAGCG 503 Query 1585 TCCAGAGAGGCTTCGTCCCAGGCCCTTCGAGACTTGCCTGTTCCAGTGCGACCCCAGTAA 1644 || ||| ||| ||||||||||| | || || ||||| | |||||| |||||| || Sbjct 504 TCGAGACCGGCCTCGTCCCAGGCTCGACGTGATTTGCCGCTCCCAGTGACGCCCCAG-AA 562 Query 1645 CA 1646 || Sbjct 563 CA 564 >seq170627 Length=2270 Score = 105 bits (116), Expect = 1e-19 Identities = 198/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 1347 TTTTGTTTCATCGTCCAGTTCAGGGTACCAAGATTCGGGAGGTAGATTACTGGTGATCCA 1406 ||| ||||| ||||||||||||| ||||| ||| || | || || || |||||||| Sbjct 1423 TTTCGTTTCGTCGTCCAGTTCAGAATACCACATTTCAGGCGAGAGGTTGCTAGTGATCCA 1482 Query 1407 GATCTTGGTTGCCTTAAGTGGTACGC-TGCTG--CCTTTGACCTCTACCATAACTGGGTA 1463 || | |||| ||||| |||| || | ||||| | || || || |||||| Sbjct 1483 GACTCTCTTTGCGTTAAGA---ACGCATGAAGACCCTTTAATTTCAACGATGGTTGGGTA 1539 Query 1464 GCGGTCGAACCAGCGAAGGACGTGGGCGATGTCGATTCCTCCTCGAAATTCATCCAAAAC 1523 || || | ||| | || | ||| |||| |||| | |||| ||||||||| | ||| Sbjct 1540 ACGATCCAGCCATCTGAGCATGTGACTGATGCTGATTGCGCCTCTAAATTCATCGATAAC 1599 Query 1524 AACGTGCTCCTGACCTCGGTATCCATCCCAAAACTTAGACCTCGGATCTTTAGGGTAAGC 1583 || || ||||||||||| || ||||| || || || | || || || || ||||| Sbjct 1600 CACCGATTCTTGACCTCGGTAACCGTCCCAGAATTTCGAGTTGGGGTCCTTGGGATAAGC 1659 Query 1584 GTCCAGAGAGGCTTCGTCCCAGGCCCTTCGAGACTTGCCTGTTCCAGT 1631 || | | ||||| |||||||| | | || ||||| || || || Sbjct 1660 ATCGAAGGTCGCTTCCTCCCAGGCGCGTTTTGATTTGCCAGTGCCCGT 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9029341783055