Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029621.1 Length=1182 Score E Sequences producing significant alignments: (Bits) Value seq170627 107 1e-20 seq171168 89.7 4e-15 seq98325 80.6 2e-12 seq98324 80.6 2e-12 >seq170627 Length=2270 Score = 107 bits (118), Expect = 1e-20 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 612 TGGGGACCTACAGCCACTGGAAAATCCAGACGAGCCTGGTCTGAAGCAGGCTCAGACGCT 671 |||||| | || | |||||| ||||| | ||| |||||| ||||| || || ||| Sbjct 1716 TGGGGAGCAACGGGCACTGGCAAATCAAAACGCGCCTGGGAGGAAGCGACCTTCGATGCT 1657 Query 672 TATCCTAAAGATCCCAGGACTAAATTTTGGGATGGTTACCAGGGTGAATCAAATGTTGTC 731 ||||| || || |||| | ||||| ||||| ||||||| ||| || | || || Sbjct 1656 TATCCCAAGGACCCCAACTCGAAATTCTGGGACGGTTACCGAGGTCAAGAATCGGTGGTT 1597 Query 732 ATGGATGAATTTAGAGGAGTTATCGCGATCGGTAATTTGCTCCGATGGCTCGACCGGTAT 791 || |||||||||||||| | ||| ||| || | ||||| ||||||| || || || Sbjct 1596 ATCGATGAATTTAGAGGCGCAATCAGCATCAGTCACATGCTCAGATGGCTGGATCGTTAC 1537 Query 792 TCTGTCCGTGTGGAAATCAAAGGGTCTTCTCGGGTACTATTGTGTAAATCCA-TGTGGAT 850 | | || ||||| ||||||||||| | || || | | ||| | | ||||| Sbjct 1536 CCAACCATCGTTGAAATTAAAGGGTCTTCATGCGTTCT-TAACGCAAAGAGAGTCTGGAT 1478 Query 851 CACTTCCAACCTCCCTCCCGAACAATGGTGGCCAGACTTGGATGCCGAAAC 901 |||| ||||||| | || ||| |||| | || |||| | |||||| Sbjct 1477 CACTAGCAACCTCTCGCCTGAAATGTGGTATTCTGAACTGGACGACGAAAC 1427 >seq171168 Length=2613 Score = 89.7 bits (98), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 630 GGAAAATCCAGACGAGCCTGGTCTGAAGCAGG-CTCAGACGCTTATCCTAAAGATCCCAG 688 || ||||| | ||||||||| || || || ||| ||||||| ||||| ||||| | Sbjct 541 GGCAAATCACGTCGAGCCTGGGACGAGGCCGGTCTC-GACGCTTTCCCTAAGGATCCTCG 483 Query 689 GACTAAATTTTGGGATGGTTACCAGGGTGAATCAAATGTTGTCATGGATGAATTTAGAGG 748 | | ||||||||||||||||||| ||| | | ||||||| || ||||| ||| |||| Sbjct 482 GTCCAAATTTTGGGATGGTTACCGAGGTCACGCGCATGTTGTTATCGATGAGTTTCGAGG 423 Query 749 AGTTATCGCGATCGGTAATTTGCTCCGATGGCTCGACCGGTATTCTGT 796 | |||| ||| || | | |||||| |||| || ||| |||| Sbjct 422 TGGAATCGATGTCGCCCATCTCTTGCGATGGTTCGATCGATATCCTGT 375 >seq98325 Length=1549 Score = 80.6 bits (88), Expect = 2e-12 Identities = 213/324 (66%), Gaps = 16/324 (5%) Strand=Plus/Plus Query 607 TTTTCTGGGGACCTACAGCCACTGGAAAATCCAGACGAGCCTGGTCTGAAGCAGGCTCAG 666 ||| |||||| || || | ||| || |||||| | || || ||| |||||| || | Sbjct 1039 TTTACTGGGGCCCAACCGGCACCGGCAAATCCCGCCGTGCTTGGGATGAAGCCACCTTTG 1098 Query 667 ACGCTTATCCTAAAGATCCCAGGACTAAATTTTGGGATGGTTACCAGGGTGAATCAAATG 726 | || ||||| || || || | ||| |||||||||||||| ||| ||| | |||| Sbjct 1099 ATGCATATCCCAAGGACCCTATGACCAAATTTTGGGATGGATACTCTGGTCAGCTGAATG 1158 Query 727 TTGTCATGGATGAATTTAGAGGAGTTATCGCGATCGGTAATTTGCTCCGATGGCTCGACC 786 | || | ||||| | |||||||| ||| | || | | | ||||| |||| Sbjct 1159 TAGTATTTGATGAGTATAGAGGAGATATATCAATATCACACCTTTTGAGATGGTTCGATA 1218 Query 787 GGTATTCTGTCCGTGTGGAAATCAAAGGGTCTTCTCGGG--TACTATTGTGTAAATCC-- 842 |||| |||| |||||||| |||| | |||| ||||||| | |||| | Sbjct 1219 GGTACCCTGTTTGTGTGGAAGCCAAA-------CACGGGGCTACTATT-TTAAAATGCAA 1270 Query 843 ----ATGTGGATCACTTCCAACCTCCCTCCCGAACAATGGTGGCCAGACTTGGATGCCGA 898 || ||||| ||||| || || | || ||| | |||| ||| |||||| || Sbjct 1271 CAAAATTTGGATAACTTCAAATCTTCACCCAGAAGATTGGTATCCAACTTTGGATCGTGA 1330 Query 899 AACCTTTGCAGCCTTCAGAAGAAG 922 ||| ||||| || | ||||| Sbjct 1331 GACCAAAGCAGCATTAATTAGAAG 1354 >seq98324 Length=1501 Score = 80.6 bits (88), Expect = 2e-12 Identities = 213/324 (66%), Gaps = 16/324 (5%) Strand=Plus/Plus Query 607 TTTTCTGGGGACCTACAGCCACTGGAAAATCCAGACGAGCCTGGTCTGAAGCAGGCTCAG 666 ||| |||||| || || | ||| || |||||| | || || ||| |||||| || | Sbjct 991 TTTACTGGGGCCCAACCGGCACCGGCAAATCCCGCCGTGCTTGGGATGAAGCCACCTTTG 1050 Query 667 ACGCTTATCCTAAAGATCCCAGGACTAAATTTTGGGATGGTTACCAGGGTGAATCAAATG 726 | || ||||| || || || | ||| |||||||||||||| ||| ||| | |||| Sbjct 1051 ATGCATATCCCAAGGACCCTATGACCAAATTTTGGGATGGATACTCTGGTCAGCTGAATG 1110 Query 727 TTGTCATGGATGAATTTAGAGGAGTTATCGCGATCGGTAATTTGCTCCGATGGCTCGACC 786 | || | ||||| | |||||||| ||| | || | | | ||||| |||| Sbjct 1111 TAGTATTTGATGAGTATAGAGGAGATATATCAATATCACACCTTTTGAGATGGTTCGATA 1170 Query 787 GGTATTCTGTCCGTGTGGAAATCAAAGGGTCTTCTCGGG--TACTATTGTGTAAATCC-- 842 |||| |||| |||||||| |||| | |||| ||||||| | |||| | Sbjct 1171 GGTACCCTGTTTGTGTGGAAGCCAAA-------CACGGGGCTACTATT-TTAAAATGCAA 1222 Query 843 ----ATGTGGATCACTTCCAACCTCCCTCCCGAACAATGGTGGCCAGACTTGGATGCCGA 898 || ||||| ||||| || || | || ||| | |||| ||| |||||| || Sbjct 1223 CAAAATTTGGATAACTTCAAATCTTCACCCAGAAGATTGGTATCCAACTTTGGATCGTGA 1282 Query 899 AACCTTTGCAGCCTTCAGAAGAAG 922 ||| ||||| || | ||||| Sbjct 1283 GACCAAAGCAGCATTAATTAGAAG 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3670263071283