Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029631.1 Length=3910 Score E Sequences producing significant alignments: (Bits) Value seq171168 77.0 8e-11 >seq171168 Length=2613 Score = 77.0 bits (84), Expect = 8e-11 Identities = 134/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 3490 CACTGGTACAGGAAAGTCTCGAAGAGCATGGGACGAAGCTGGCTTCGACGCTTACCCGAA 3549 |||||| | || || || || |||| |||||||| || || ||||||||| ||| || Sbjct 551 CACTGGGAGCGGCAAATCACGTCGAGCCTGGGACGAGGCCGGTCTCGACGCTTTCCCTAA 492 Query 3550 AGATCCGAATACTAAATTCTGGGATGGATATAATGGACACAAAAACGTCGTTATTGATGA 3609 ||||| | ||||| |||||||| || || ||| | || ||||| ||||| Sbjct 491 GGATCCTCGGTCCAAATTTTGGGATGGTTACCGAGGTCACGCGCATGTTGTTATCGATGA 432 Query 3610 ATTCCGCGGTATTATCAACATCTCAAATGTGCTCCGATGGTTCGACCGTTACCCTGTTCT 3669 || || ||| ||| | || | || | | ||||||||||| || || ||||| | Sbjct 431 GTTTCGAGGTGGAATCGATGTCGCCCATCTCTTGCGATGGTTCGATCGATATCCTGTGGT 372 Query 3670 TGTTGAAGTCAAAGG 3684 || || || ||||| Sbjct 371 CGTCGAGGTTAAAGG 357 Score = 77.0 bits (84), Expect = 8e-11 Identities = 134/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 524 CACTGGTACAGGAAAGTCTCGAAGAGCATGGGACGAAGCTGGCTTCGACGCTTACCCGAA 583 |||||| | || || || || |||| |||||||| || || ||||||||| ||| || Sbjct 551 CACTGGGAGCGGCAAATCACGTCGAGCCTGGGACGAGGCCGGTCTCGACGCTTTCCCTAA 492 Query 584 AGATCCGAATACTAAATTCTGGGATGGATATAATGGACACAAAAACGTCGTTATTGATGA 643 ||||| | ||||| |||||||| || || ||| | || ||||| ||||| Sbjct 491 GGATCCTCGGTCCAAATTTTGGGATGGTTACCGAGGTCACGCGCATGTTGTTATCGATGA 432 Query 644 ATTCCGCGGTATTATCAACATCTCAAATGTGCTCCGATGGTTCGACCGTTACCCTGTTCT 703 || || ||| ||| | || | || | | ||||||||||| || || ||||| | Sbjct 431 GTTTCGAGGTGGAATCGATGTCGCCCATCTCTTGCGATGGTTCGATCGATATCCTGTGGT 372 Query 704 TGTTGAAGTCAAAGG 718 || || || ||||| Sbjct 371 CGTCGAGGTTAAAGG 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12376618114375