Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq18725 161 3e-35 seq90214 122 3e-23 >seq18725 Length=24047 Score = 161 bits (178), Expect = 3e-35 Identities = 222/308 (72%), Gaps = 3/308 (1%) Strand=Plus/Minus Query 33605 CCATT--TGCTGGATAACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCA 33662 ||||| ||||| | ||| |||||||| || || || ||| ||||| ||||| Sbjct 10513 CCATTAATGCTG-ACAACGATTTCTGTTGTATAACGATCTTGTCCGTTTTTATCCGTCCA 10455 Query 33663 TTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACC 33722 |||||| || | || |||||||||| |||||| | || ||||| ||||||| | ||| Sbjct 10454 TTTTCTTGTTTGTAATTGACCTTCAATATAAACAAGCGAACCTTTTTTAAGATATTGACC 10395 Query 33723 AGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTT 33782 ||||||||||| || || ||||| ||||| | ||||||||||| || | || | | Sbjct 10394 TGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATTCTGTACGATCTTGTGG 10335 Query 33783 CTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGC 33842 || ||| || ||||| ||||| | ||||||||| |||| | || ||| | ||| || Sbjct 10334 CTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCGTTAAGTTCGTAACTGC 10275 Query 33843 GCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTAC 33902 || ||||||||||| ||| || || || || || ||||| || | | ||||| Sbjct 10274 ACCACCATTTGGCATATATTTAACATCAGGATCTTGCCCTAAATGCCCCAATAAAATTAC 10215 Query 33903 TTTATTTA 33910 |||||||| Sbjct 10214 TTTATTTA 10207 >seq90214 Length=2210 Score = 122 bits (134), Expect = 3e-23 Identities = 205/296 (69%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 33616 ATAACAATTTCTGTGGTGTATTTTTCAACTCCAGCATT---ATCAGTCCATTTTCTAGTG 33672 |||||||||||||| || || ||| || | || ||||||||| |||||||| Sbjct 713 ATAACAATTTCTGTAGTATAACGATCAGTACCTGTTTTTGTATCAGTCCACTTTCTAGTC 772 Query 33673 CGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCA 33732 | | | || || | |||||| |||| ||||| | ||||| | ||| |||||||| Sbjct 773 TGAATTTTTCCCTCGATATAAACAAGTGATCCTTTTTTGAGATATTGACCTGCAATTTCC 832 Query 33733 GCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTA 33792 || ||||||||||| |||||||| || |||||||||||| || | || || || | Sbjct 833 GCAAGCTTGCCAAAAATAACTACACGATGCCATTCAGTTCTATCTTGTTGCTGTCCTGAT 892 Query 33793 GCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTT 33852 ||||| ||||| ||| ||||| |||| || || ||||| || ||||| Sbjct 893 TGTTTATCTTTCCAGCTTTCAGATGTTGCAATGTTTAGATTCGCAACGGCATTTCCATTA 952 Query 33853 GGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATT 33908 ||||| || ||||| || || || ||||| ||| | | || |||||||| Sbjct 953 GGCATATACTTAACTTCAGGATCTTGTCCTAAGTGGCCTAATAATATAACTTTATT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144676002713648