Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_033741.1 Length=4576 Score E Sequences producing significant alignments: (Bits) Value seq90316 143 8e-31 >seq90316 Length=3982 Score = 143 bits (158), Expect = 8e-31 Identities = 269/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 3824 AAGCCAATGCATTGGACGTGGGATCAGATCGTTCACGAGTCCGATGAGTCAAAGGCATTG 3883 ||||| | |||||||||||||| ||||| |||||||||||| ||||||| || | Sbjct 3574 AAGCCTAAACATTGGACGTGGGAACAGATTGTTCACGAGTCCTATGAGTCTAAACTTCTT 3633 Query 3884 CTAGCTACATGCTCGTGGGGCACGAAGTATCATCAAGGTCGCTACGCGAGTACACCAAGA 3943 || ||| || || ||||| | || | || ||| | | || |||||||| Sbjct 3634 CTCGCTGATTGTTCTTGGGGTTCTAAATTCCACGCTGGTAGATTTGCTGAAGCACCAAGA 3693 Query 3944 CGTACGATCCAGGATGTAGTTATTTTGTACGGCGCCGGTGGTACTGGCAAAACTACATTA 4003 |||| || |||| | || ||||||| || || ||||| || ||||| || | Sbjct 3694 CGTATCATTAGCAATGTCATCATCATGTACGGAGCGGGCGGTACCGGTAAAACCACTCTC 3753 Query 4004 GCCCATAAATGGGATGAAAAAGATGGGGAGGATTTCGAAGAAAGGTACTTCCGTCGTAAT 4063 ||||| |||||||||| || | || |||| | ||| | |||| ||| ||||| Sbjct 3754 GCCCAAAAATGGGATGCGCGCGACGATGAAGATTATCAGGAACGTTACTACCGGCGTAAC 3813 Query 4064 CCTGATGATGGTAACTTTTGGGGCGGCGGCCGAACAGCTTACAGGGGGCAGCGTATCGTC 4123 ||| ||||| || ||||||||||||||||| || | |||| | || || | Sbjct 3814 TATGACGATGGAAAGTTTTGGGGCGGCGGCCGTACCGGATACAAAGCTCAACGATGTATA 3873 Query 4124 CACTTTGAAGAGTTCTGCGGGCAAGAACCATTTCACCGA-ATCAAGGAAGTCTGTGATGT 4182 ||| | |||||||| ||||| |||| | || | || | |||| ||| |||||||| | Sbjct 3874 CACCTCGAAGAGTTTTGCGGCCAAG-AGCACGCCTCCAAGTTCAAAGAACTCTGTGATTT 3932 Query 4183 CGGTAAGCATGGCCCGTCAGTCAACATCAAGAA 4215 ||||| | || || | |||||| |||| || Sbjct 3933 GGGTAAACGCGGTCCACCCGTCAACGTCAAAAA 3965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14503799447065