Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_033746.1 Length=4729 Score E Sequences producing significant alignments: (Bits) Value seq90316 149 2e-32 >seq90316 Length=3982 Score = 149 bits (164), Expect = 2e-32 Identities = 279/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 3950 ATCGAGTCTAAGCCAATGCACTGGACTTGGGACTCTATCGTTCATGAGTGTGAAGAGTCC 4009 || ||||| ||||| | || ||||| ||||| || ||||| |||| | ||||| Sbjct 3565 ATTGAGTCGAAGCCTAAACATTGGACGTGGGAACAGATTGTTCACGAGTCCTATGAGTCT 3624 Query 4010 AAAGTGTTGTTGGCTACATGTTCCTGGGGGCAAAAATACCATGCTGGTCGTCATGCTAGT 4069 ||| | | | ||| ||||| ||||| |||| ||| |||||| | |||| Sbjct 3625 AAACTTCTTCTCGCTGATTGTTCTTGGGGTTCTAAATTCCACGCTGGTAGATTTGCTGAA 3684 Query 4070 ACCCCACGACGGACAATTCGTGATGTGGTTATTATGTACGGTGCTGGCGGTACCGGTAAA 4129 | ||| |||| | ||| | |||| | || |||||||| || ||||||||||||||| Sbjct 3685 GCACCAAGACGTATCATTAGCAATGTCATCATCATGTACGGAGCGGGCGGTACCGGTAAA 3744 Query 4130 ACCACATTGGCTCATAAATGGGATGTAAAAGAAGATGAGGATTTCCAGCAGCGCTACTAC 4189 ||||| | || || |||||||||| || ||||| |||| ||| | || |||||| Sbjct 3745 ACCACTCTCGCCCAAAAATGGGATGCGCGCGACGATGAAGATTATCAGGAACGTTACTAC 3804 Query 4190 CGTAGAAATCCTGATGATGGTAACTTTTGGGGCGGTGGACGTACAGCTTACAAGGGGCAG 4249 || | || ||| ||||| || ||||||||||| || ||||| | ||||| | || Sbjct 3805 CGGCGTAACTATGACGATGGAAAGTTTTGGGGCGGCGGCCGTACCGGATACAAAGCTCAA 3864 Query 4250 CG-TATAGTCCACTTTGAGGAGTTCTGTGGTCAGGA--ACCCTTTCACCGTATCAAAGAG 4306 || | || | ||| | || ||||| || || || || || | | || || ||||||| Sbjct 3865 CGATGTA-TACACCTCGAAGAGTTTTGCGGCCAAGAGCACGCCTCCA-AGT-TCAAAGAA 3921 Query 4307 GTTTGTGATATCGGTAAAGAGGGCCCGTCAGTTAACATCAAGAA 4350 | |||||| | |||||| || || | || ||| |||| || Sbjct 3922 CTCTGTGATTTGGGTAAACGCGGTCCACCCGTCAACGTCAAAAA 3965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14992476239710