Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq25027 450 1e-121 seq25828 185 7e-42 seq35853 116 3e-21 seq11803 102 6e-17 >seq25027 Length=9736 Score = 450 bits (498), Expect = 1e-121 Identities = 637/893 (71%), Gaps = 7/893 (1%) Strand=Plus/Plus Query 61023 CAATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGA 61082 || |||||| || ||| ||||||| || | | ||||| | ||||| || |||| | Sbjct 5384 CATTGAACCGCTTTTGAAAGAGAACCCCAGGAGGTTCGTGATATTCCCAATTCAGTACAA 5443 Query 61083 GGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGA 61142 || |||||| | | ||||||||||| || |||||||||||||| ||||| ||||| || Sbjct 5444 AGACATTTGGGACTTTTACAAAAAGGCTGAGGCTTCCTTCTGGACTGTGGAAGAGGTGGA 5503 Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG--GTGAACAACATTTCATT 61200 ||||| ||||||||| || |||||| || ||| |||| ||||||||| Sbjct 5504 CTTGTCTAAAGACATGGCCGATTGGGAGAAG--ATGCAGCCATGTGAGAGGCATTTCATT 5561 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 |||||| | || || ||||| || ||||| || || |||||||| || ||||| Sbjct 5562 TCCCATGTGCTTGCCTTTTTTGCAGCCAGTGACGGAATTGTGAATGAGAACTTGGTGGAA 5621 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 || ||| ||||||||||| || | ||||| || | |||||||| || ||||| || Sbjct 5622 CGGTTCAGTCAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGATCGCT 5681 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||||||||| ||||| || |||||||| |||| || |||||||||| ||| Sbjct 5682 ATGGAGAATGTACACTCTGAAATGTACAGCATTCTGATTAATACGTACATTCAGGACACA 5741 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | ||| | || ||||||| ||||| || ||| | || |||||| ||| || Sbjct 5742 GTGGAGAGAGAGTTTCTGTTCAACGCCATTGAAACGCTGCCCTGTGTGAAGAAGAAGGCA 5801 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 || |||||||| ||||||||| ||||| | ||| | ||||| ||||| || | || Sbjct 5802 GACTGGGCCTTGAATTGGATCGCCAGTGATAAGGCGAACTTTGGAGAACGTGTGATTGCT 5861 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || || | |||||||||||| |||||| | ||||||||| | ||| Sbjct 5862 TTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAG 5921 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 ||||| || || ||||| ||| |||||||| |||||| |||| ||||| ||||| || Sbjct 5922 AAACGAGGTCTAATGCCTGGTTTGACCTTCTCCAATGAACTGATTTCACGAGACGAAGGA 5981 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| |||||||| ||| | | ||||||| || ||||| | ||| | || Sbjct 5982 CTGCACTGTGATTTCGCTTGCCTCATGTTCAAACACT---TGGTGCAGAAGCCGACAAAG 6038 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || || | ||| || | ||||| || || || ||||||||||| |||| ||| Sbjct 6039 GAACGAATTATTGAAATCATCCGTGAAGCCGTGGTCATTGAACAGGAATTCTTGACAGAC 6098 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 ||| | || || | ||||||||||| || ||| ||||| || ||||||||| Sbjct 6099 GCTCTTCCAGTAGACATGATCGGCATGAACTGCAAACTGATGTCCTTTTACATTGAATTT 6158 Query 61801 GTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 || || |||||||| | || || |||| | || ||||| || ||| ||| || Sbjct 6159 GTCGCGGACCGTCTTCTAGTGGAGCTGGGAGTCGAGAAAATCTACAACACGCCAAATCCT 6218 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || |||||||||| | || ||||| || || ||||||||||| |||||||| Sbjct 6219 TTCAATTTCATGGAGTTTATCTCGCTCGAGGGGAAGACGAATTTCTTCGAGAA 6271 >seq25828 Length=6072 Score = 185 bits (204), Expect = 7e-42 Identities = 610/938 (65%), Gaps = 28/938 (3%) Strand=Plus/Minus Query 65707 TTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 || |||||| | || || || | ||||||| || |||||||| || | || | | Sbjct 5979 TTCACAGCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAA 5920 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 | ||||| |||| ||||| ||||| | |||||||| || | ||| |||| || || Sbjct 5919 CTGCGCCTCTGCGCTTTCGTAGGGCATTCTCATCAGGATGAAGGCGTCTGCCAAGCCCTG 5860 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 || ||||| ||||| |||||||| | || ||| || | ||||||| ||||| || || Sbjct 5859 GACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGCCTCTGGTACGGGATA 5800 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACAT-GCACGATACGTCGCA 65945 ||||||||||| || | ||| | ||| | ||||||| | | | | | | || Sbjct 5799 ATAATTGATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTGGTCACTTCCTT-CA 5741 Query 65946 ATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 ||| | ||||| | | || || || || ||| |||| || | Sbjct 5740 ATTTCTTAAAATCGTACTTCTTC------TC---AGCTACGTTCAC---AAACATGTTCA 5693 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCA--GGAGCGGTATACTCGACAAT 66063 |||| | ||||| ||||| |||||||| | ||| || ||||| |||| || ||||| Sbjct 5692 GGGCGATCGATGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTAT--TCCACAAT 5635 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 || ||||||||||||||||| || || ||||| | |||||| ||||| ||||| | ||| Sbjct 5634 CTCTGTGCACAGATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATT 5575 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACT--CAATGATG 66181 || |||||||| || | ||| || || | || ||||| |||| |||| || || Sbjct 5574 ACAGGCATCCTTATAAAGCATATAAGGCATTCCAGTCTCCACTT--GACTTGTGATAATA 5517 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 || ||||||| | |||| || ||| | ||| | |||| || || | Sbjct 5516 GCCATCCAAAGATCCTGTGCTTTGACCTTTTTTACATATTTCCCTTCTGACTCATACTTC 5457 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 || | | || || || ||||| || ||| | || | | || ||| Sbjct 5456 ATATACAATTTATCAAATTCATCTCCCCAACAATCAAACAATCCAGGGGAATCGTCAGGA 5397 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||||| |||| || |||| || ||| || | ||| || | || || ||||| Sbjct 5396 CACATCAAGCACCATTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATCCAA 5337 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCG---TTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || ||||| || | ||| | ||||| || ||||| | | || ||| || || Sbjct 5336 AGAGCGTAAAATAAATCTCTAGCTCGTTCTTTTTCCTC--TCCTGT-ATTCTTCTTTAAA 5280 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 | | ||| ||||| |||||||||||||| || || | || ||||| | | || Sbjct 5279 TTCAAGAAATCAAATATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGGT 5220 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 | |||| || ||||| || || || || || | || || | | |||||| ||| Sbjct 5219 CTTTTGTTTCCGCCTTGATCCACATATCGGGCCATGTTATTATATAATTTCAACATTGGT 5160 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 || || || | || ||||| | ||| ||||| | ||| || || || | Sbjct 5159 ACAAGGCCATCGGAGAATCCATTTATTCCGGCGATGTAGCTTCCCTTGGCTCGAATGCAG 5100 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||||||||| ||||| ||||| || | ||| || || Sbjct 5099 TGAACATTCACGCCAATTCCACCCGCTGACTTTGATAT 5062 Score = 123 bits (136), Expect = 2e-23 Identities = 323/489 (66%), Gaps = 4/489 (1%) Strand=Plus/Minus Query 65117 CTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGAT 65176 || |||| | |||| |||||||| || || |||||| ||||| || || || | | Sbjct 749 CTCAGATTGAACATTCCGGTCTTAAGACCGAGTTTCCAAGCGTAGAAGTGGATTGAAGTT 690 Query 65177 AATTTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAA 65236 |||||| |||| ||||| | | || || || || || | |||||| ||||| || | Sbjct 689 AATTTTCCATAGTTCGGTGCCACAACGTGAATGTTAAAAGCCTGACTTTGATCAATAAAG 630 Query 65237 CGACCACGATCTGCAGCCATGT-CAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCT 65294 ||| ||||| |||||||| | || || | | | | | | || ||||| || || | Sbjct 629 GCACCTCGATCAGCAGCCATATTCATTGTTGC--CTTTACACTGATTTCCCAAACTGTTT 572 Query 65295 TGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTG 65354 |||| ||| || | ||| |||||| || || | || | || ||| ||| Sbjct 571 TGTAAAGGGCTCGGATTTCATCTGGAATTTCTAGTATATTTTGAATGGATCCATTGTGTG 512 Query 65355 CAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCA 65414 |||| || || ||| || |||||| ||| ||| | | | || | || Sbjct 511 CAATGATTTTGTTCTTCATGTCATCATTCCACAATTCCAGTTCGGTTAAGTCTTTCAGCA 452 Query 65415 AGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 | |||||||| | || ||||| || || |||| || ||||| |||||||| |||| Sbjct 451 AATGACGATTCACCACCTGGAATTCTCCAGACAAAACTCGACGATTGTAGATGTTCGACG 392 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || ||||| ||||| |||| || || ||||| || || || || |||||||| | Sbjct 391 TGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTG 332 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCC 65594 | || | || | ||||||| || |||| || | || || | || || ||| Sbjct 331 GGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCC 272 Query 65595 AGTTCCACA 65603 ||||||||| Sbjct 271 AGTTCCACA 263 >seq35853 Length=3953 Score = 116 bits (128), Expect = 3e-21 Identities = 342/527 (65%), Gaps = 0/527 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || || || || || || |||| | || || | | ||| ||||| || || Sbjct 3365 ATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCCGT 3424 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| || || ||| ||||||| || ||||| | || ||| | |||||||| | Sbjct 3425 CTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGGTGC 3484 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || || || ||||| || ||||| || | || ||||| |||||||| Sbjct 3485 AGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGCCAT 3544 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 || || || | | || ||||| || || || || || || | || Sbjct 3545 GTTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTCTTC 3604 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||||| ||||| || | || | || ||| ||||||| || || ||| Sbjct 3605 AGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCATGTC 3664 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || |||||| ||| ||| | | | || | ||| |||||||| | || ||||| Sbjct 3665 ATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACCTGGAA 3724 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || || | || || ||| ||||||||||||||| || ||||| ||||| | Sbjct 3725 TTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGATTCGTT 3784 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 ||| || || ||||| || || || || |||||||| || || | || | ||||||| Sbjct 3785 GTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAGTTTCT 3844 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA 65603 || |||| || | || || | || || |||||||||||| Sbjct 3845 CACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCACA 3891 >seq11803 Length=6467 Score = 102 bits (112), Expect = 6e-17 Identities = 356/556 (64%), Gaps = 0/556 (0%) Strand=Plus/Minus Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 |||||||||||||||| || || ||||| | ||||| ||||| || || | ||| || | Sbjct 6467 TGCACAGATTACTGCATCGAATAGTGCCGATGTTCTGCTGATTGCTTTTTCTATTACAGG 6408 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 | || || || | ||| || ||||| |||||||| |||||| || || || || Sbjct 6407 CGTCTTTATAAAGCATATATGGAGTTCCGGTCTCCACTTGGCTTGTGATAATAGCCATCC 6348 Query 66189 AAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 |||| | |||| || | | | ||| | ||| ||| || | || | Sbjct 6347 AAAGGTCCTGTGCTTTGATCTTTTTTACATATTTCTCTTCTGATTCATACTTCATATACA 6288 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | || || || ||||| || ||| | || | | || || ||||||| Sbjct 6287 ATTTATCAAATTCATCTCCCCAACAATCAAACAATCCAGGGGAATCGTTAGGGCACATCA 6228 Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 |||||||||||| || |||||| | ||| || | || || ||||| ||||||| Sbjct 6227 AGCACCAATCACCATTCTCTTCTACCCTCTTCATGAACAAGTCTGGAATCCATAGGGCGT 6168 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 | || | ||| | || || | || || | || |||||| || || || || | Sbjct 6167 AAAACAAATCTCTGGCGCGATATTCTTCCTTTCCCGTATTTTTCTTCAGGTTCAGAAAAT 6108 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||| ||||| |||||||| ||||||| ||| | || | | ||| | |||| | Sbjct 6107 CAAAAATGTCTGCATGCCACGGTTCCACGTAAACTGCCCATGCGCCGGGTCTTTTGTTCC 6048 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | |||||||| | | || ||| | || ||| | | |||||||| || || || | Sbjct 6047 CGCCTTGGTCCAGATGACGGGCGGCGTTATTGTAAGTTCTTAACATCGGCACCAGGCCTT 5988 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | ||| | |||| || || | ||| | ||| || || | | ||| | ||||| Sbjct 5987 TGGATATTCCATCTGTTCCAGCAATGTAGCTTCCATTGGCACGCACACTGTGGATATTCA 5928 Query 66609 GACCAATACCACCGGC 66624 | || || ||||| || Sbjct 5927 GCCCGATTCCACCAGC 5912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397360201891040