Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1047 304 5e-80 seq617 86.0 3e-14 seq1401 75.2 5e-11 >seq1047 Length=1585 Score = 304 bits (336), Expect = 5e-80 Identities = 215/242 (89%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 14 GCCTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 |||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 790 GCCTAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 849 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 850 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 909 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 910 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 969 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 ||||||||||| |||||||||| | | || | ||| || || ||| || ||||||| Sbjct 970 GGAAGCGCTTGTGACCAGACTTGGGCCCGGTGGATCATCCAGCGTTCTC-GCTGGTGCAC 1028 Query 252 TC 253 || Sbjct 1029 TC 1030 Score = 284 bits (314), Expect = 5e-74 Identities = 216/252 (86%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 390 CGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC-TATGCG 448 ||||||||| | |||| ||||||||| |||||||||||||||||| | || |||||| Sbjct 1339 CGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCGT-CTTCGTATGCG 1397 Query 449 AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAG 508 |||||| |||||| |||||| | ||||||||||||||||||| ||||| || | Sbjct 1398 AGTGTTCGGGTGTAAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGAGCTTC---- 1453 Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTG 568 || ||| ||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1454 GGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCATACGGGGCC 1513 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1514 GGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 1573 Query 629 GGCTCGCAGCGG 640 |||||||||||| Sbjct 1574 GGCTCGCAGCGG 1585 >seq617 Length=1570 Score = 86.0 bits (94), Expect = 3e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 112 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 53 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 || | ||||||||||| ||||||| |||| ||||| ||||||| Sbjct 52 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAG 3 >seq1401 Length=5365 Score = 75.2 bits (82), Expect = 5e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| | || ||| |||| | | ||||||||||||| Sbjct 5260 GAGTCGTGTTGCTTGATAGTGCAGCACAAAGCGGGTGGTATACTCTATCTAAAGCTAAAT 5319 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||| | |||||| |||||| ||||||| |||| ||||| ||| Sbjct 5320 ATTACCATGAGACCAATAGCGAACAAGTACCGTGAGGGAAAGTTGA 5365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079962848600