Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq130924 385 1e-104 seq16745 228 2e-57 >seq130924 Length=2248 Score = 385 bits (426), Expect = 1e-104 Identities = 367/459 (80%), Gaps = 23/459 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| | |||| |||||||||| ||||||||||||||||| Sbjct 2187 TATTTTTCGTCACTACCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCC 2128 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2127 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 2068 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||||| |||||||||| ||| || |||||||| | ||||||||||||||| ||||| Sbjct 2067 CCCGTTGCAACCATGGTAGTCCAAGATACTACCATCAATAGTTGATAGGGCAGACATTTG 2008 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAA- 279 || || | ||| ||| |||| |||| ||| || ||||||| || | ||||| Sbjct 2007 AAAGATCTGTCGTCGGTACAAGACCATACGA-TCAGCAAGTTATCTAGAGTTCAACCAAT 1949 Query 280 -----GGAGCCCCGAAGG--GCG-TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA- 330 || ||||||||| || |||||||| | |||||||| ||| | | | || Sbjct 1948 TTAAGCGATCCCCGAAGGTATCGATTGGTTTTAGA-CTAATAAAAGCACACGTCCAAAAA 1890 Query 331 -GTCGGGGTTTTTA---GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 || | |||| || |||||||||||||||||||||||||| |||||||| ||| | Sbjct 1889 GGTTCGTGTTTATAATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--AC 1832 Query 387 GGT--ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG 444 || || ||| || ||| ||||||||| ||||||||| || || |||||||| | || Sbjct 1831 TGTTAACGATCTAAGGAACCATAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAT 1773 Query 445 ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 || | || ||||||||||||||||||||||||||||||| Sbjct 1772 ATAGTTTGTACTTAGACATGCATGGCTTAATCTTTGAGA 1734 >seq16745 Length=7616 Score = 228 bits (252), Expect = 2e-57 Identities = 284/381 (75%), Gaps = 36/381 (9%) Strand=Plus/Minus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||||| ||||| | ||||||||||||||| | |||| |||||||||| |||| Sbjct 5489 AGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGAGCTGGGAGTGGGTAATTTACGCG 5430 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5429 CCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 5370 Query 150 TAATTCCCCGT-----------TACCCGTTGATACCATGGTAGGCC-ACTATCCTACCAT 197 | ||||||||| || |||||| |||||| ||| || ||| | ||||| Sbjct 5369 TGATTCCCCGTTGCAACCATGATAGCCGTTGCAACCATGATAGTCCAACTGTACTACCGC 5310 Query 198 C--GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT 255 | | |||| |||||||||| ||||||| || | ||| ||| |||| |||| ||| | Sbjct 5309 CAACAGAGTTCATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGA-T 5251 Query 256 CGTTAAGTTATTATGAAT--CACCAA------GGAGCCCCGAAGG--GCG-TTGGTTTTT 304 | ||||||| || | ||||| || ||||||||| || ||||||| Sbjct 5250 CAGCAAGTTATCTAGAGTTCAACCAATTTAAGCGATCCCCGAAGGTATCGAATGGTTTTA 5191 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGG--TTTTTA-----GCATGTATTAGCTC 357 | |||||||| ||| | | | || | || | | |||| |||||||||||||| Sbjct 5190 GA-CTAATAAAAGCACACGT--CTAAATAGGTGCATGTTTATAATTGCATGTATTAGCTC 5134 Query 358 TAGAATTACCACGGTTATCCA 378 || ||||||| | |||||||| Sbjct 5133 TAAAATTACCGCAGTTATCCA 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507208268032