Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq111081 178 4e-40 seq210476 98.7 3e-16 seq208926 89.7 2e-13 seq205685 80.6 8e-11 >seq111081 Length=2465 Score = 178 bits (196), Expect = 4e-40 Identities = 188/248 (76%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 12465 GCAGTCGCATCTTTCAGTCTTGCGGTTAACCGTAATTTTAAAGACGCTAACGGAGAGCGT 12524 ||||| ||| | || | || ||| | |||||||| |||| | || || ||| | ||| Sbjct 2218 GCAGTGGCAACCTTTACCCTAGCGTTAAACCGTAACTTTACGAATGCAAATGGAAATCGT 2277 Query 12525 GAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTGGCTAACTGG 12584 ||| | || |||||||||||||| |||||||| ||| ||||||| ||||||| | Sbjct 2278 GAAGCAGATTTTATTAACTGTGTGATTTGGCGTAAACCTGCTGAAACAATGGCTAATTAT 2337 Query 12585 GCCAAAAAAGGGGCATTGATTGGCATTACTGGACGCATTCAAACACGTAGCTACGAGAAT 12644 ||||| ||||| ||||| | || | ||||| || || ||||| | | ||| |||||| Sbjct 2338 GCCAAGAAAGGCACATTGCTAGGTGTAACTGGTCGTATCCAAACGAGAAACTATGAGAAT 2397 Query 12645 CAGCAAGGTCAACGAGTATATGTGACAGAAGTTGTCGCTGAAAATTTTCAAATGCTAGAA 12704 || ||||||||||| || |||||||| ||| ||||| || ||||| ||| || ||||| Sbjct 2398 CAACAAGGTCAACGTGTTTATGTGACTGAAATTGTCTGCGATAATTTCCAACTGTTAGAA 2457 Query 12705 AGTCGTGC 12712 |||||||| Sbjct 2458 AGTCGTGC 2465 >seq210476 Length=1998 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 2773 GTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACT 2832 |||||||| ||||||||||||||||||||| | || |||||| | | || | | Sbjct 1746 GTATCACATCGTTCAGGTGAAACTGAAGATACTTTTATTGCTGATTTAGTCGTCGGTCTT 1805 Query 2833 AACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAAC 2892 | | |||| ||||||||||| ||| | | ||| |||| ||| | |||||||| || Sbjct 1806 AGCACTGGACAAATTAAGACTGGTGCCCCATGCCGTTCTGAACGTTTGGCTAAATATAAT 1865 Query 2893 CAATTGCTTCGTATCGAAGACCAACTTGG 2921 ||| | |||||||| ||||| ||||||| Sbjct 1866 CAAATTCTTCGTATTGAAGAAGAACTTGG 1894 >seq208926 Length=1341 Score = 89.7 bits (98), Expect = 2e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1697 GTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCTG 1756 ||||||| |||| ||||| || || ||||| || |||| ||||||| || |||| || Sbjct 993 GTGAAGTAATTGATTCACGAGGAAATCCAACTGTTCAAGTTGAAGTTTGAACAGAATTTG 1052 Query 1757 GTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAG 1816 | | || ||| | ||||| || |||||||| |||||||| | |||||| ||| Sbjct 1053 GCGGATATGGTTCAGCAATGGTACCATCAGGAGCTTCAACTGGAAGTCGTGAAGCATTAG 1112 Query 1817 AACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTG 1873 || | | |||||||| |||| |||||| || ||| | ||||||||||| Sbjct 1113 AATTAAGAGATGGTGATAAAGGACGTTACCAAGGGAAAGGTGTTTTAAAAGCAGTTG 1169 >seq205685 Length=35797 Score = 80.6 bits (88), Expect = 8e-11 Identities = 296/455 (65%), Gaps = 13/455 (3%) Strand=Plus/Minus Query 18940 AATCACGATTGGTTTATCT-GTGGTCTTCACGGCGCTAAGCGAGCAGGCAAGACCGTCGT 18998 || || ||||||||||| || | || || || || ||||| |||| || || | Sbjct 21473 AAACAAGATTGGTTTATAACGTTG-CTGCATGGAGCGAAGCGGTCAGGTAAAACGAAAAT 21415 Query 18999 TAACAACGATACGTTTGTGACCGAGTTAAGCCGTGTGAGGAAGATTGCAGACCGTTTGGG 19058 || || || ||| || ||||||| | ||||| || || || || || || Sbjct 21414 AAATAATGACTTATTTCTGTTCGAGTTACGACGTGTTAGAAAAATAGCCGATGACGAAGG 21355 Query 19059 TGTGGATGAACCTATTTACATCCTAGCGGGTACGTCG---TCGACTTCGATACAGAATAA 19115 || | || || || ||||| |||| ||| || ||||| ||| || || || Sbjct 21354 CGTAAAAGAGCCGATGTACATATTAGCTGGTGTTTCCAGTTCGAC---GATTCAAAAGAA 21298 Query 19116 CGTGTTGCAAGAGCTTTATAATAAATACGGATTTGAGCCTAGATATGACAAACATGGCTC 19175 | | ||||||||||| ||||||| ||| | || |||| ||||||||||| || Sbjct 21297 CATATTGCAAGAGCTATATAATATGTACAACATCGAACCTAAGTATGACAAACACGGAAA 21238 Query 19176 TTTTGTTTTTTGTGGAGTTAAAGTTGTCCAAGTTTACACTGGTTCAATTAGTGGTCTTAA 19235 |||| || | ||| || || || || |||| || || || ||| | || || Sbjct 21237 TTTTAAGTTGTTTGGCGTGAAGGTGGTACAAGCCTATACGGGAAATATTGGAGGCGTTGG 21178 Query 19236 ACGTGCCCGCGGTTTTACAGCGTTCGGCGCTTATGTTAATGAGGCATCACTTGCTAA-CG 19294 | | | ||| | ||||| ||||| |||||||| || || || || || || || || Sbjct 21177 AGCTATTAGAGGTATGACAGCTTTCGGTGCTTATGTAAACGAAGCGTCGCTAGCCAAGCG 21118 Query 19295 AG-GTTGTTTTCAAGGAGATTATATCACGGTGCTCAGGTGAGGGGGCTCGTATAGTTTGG 19353 || ||||| || || ||| |||| || || || || || || | ||| | | Sbjct 21117 AGAAGTGTTTGCA--GAAATTGTATCGCGTTGTTCTGGAACTGGTGCAAGGATATTAGGC 21060 Query 19354 GACAGTAACCCAGACAACCCTAACCATTGGCTTAA 19388 || | |||||||| ||||| | |||||| |||| Sbjct 21059 GATACAAACCCAGATAACCCAGAACATTGG-TTAA 21026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155646838896948