Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq121975 134 1e-27 seq34844 102 7e-18 >seq121975 Length=4353 Score = 134 bits (148), Expect = 1e-27 Identities = 313/466 (67%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 7902 CCCACaaaaaaaGTGTTAAAAACCTTATTGAGTGAACCC--GCTACTGACTGGAAAGAAT 7959 || |||||||| || |||| ||| ||| | || |||||| | || ||| ||| | Sbjct 196 CCAACAAAAAAGGTATTAACAACATTACT-AG-GAACCCCTGATATAATATGGCCAGACT 253 Query 7960 TTTTAAAAGCAATTAATGATGTCGGATTATCCTGGGATGATTTGGTCATCGGACTGAAAG 8019 || | || |||||||||||| |||||| || | || || | || ||| | | || Sbjct 254 TTGTGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATAGGATTAAGAG 313 Query 8020 AAAAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGA 8079 ||| || || ||| |||||| || || | | || | |||||||| ||| || | Sbjct 314 CAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTA 373 Query 8080 GAGAATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATG 8139 || || ||||| ||| || || | || ||| |||||| || || ||| | | Sbjct 374 GATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGG 433 Query 8140 GATTAACAATGGCTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTG 8199 ||||||| ||||| || || ||| ||| | | | || ||| | ||||| || | Sbjct 434 GATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGG 493 Query 8200 GACAAGGATTGGATAATTATGATGTGATCTATTTGGCCAATCACATCGATTATGAGAAAT 8259 | ||||| | || ||||| || || | | | || ||||| | ||||| ||||| Sbjct 494 GTCAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAAT 553 Query 8260 GGAATAACCACCAACGACAAGCCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCT 8319 |||||||| | || || ||| | | | ||||||||| || |||||||||||||| Sbjct 554 GGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTC 613 Query 8320 TGGGTTACCCTAATTTAATTTAC-AGAACACACGAATTTTTTGAGA 8364 | ||| | ||||| |||||| ||||| || ||| | ||||||| Sbjct 614 TTGGTGCCGAGAATTT-ATTTACAAGAACGCATGAAATCTTTGAGA 658 Score = 91.5 bits (100), Expect = 1e-14 Identities = 250/383 (65%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 9867 TGGAATTCCCGAGGCCCCTATCCTGCTTACTTGGGATCTAGAACCTCTGAGTCCACTAGT 9926 ||| | ||| |||| || | | | || || |||||||| | ||| ||||| | || || Sbjct 2221 TGGGAATCCAGAGGACCATTTGCGGCATATTTGGGATCAAAAACATCTGAATTTACGAGC 2280 Query 9927 GTGATTAGTCCTTGGGAACGGACAACCAATATCCCTCTCATAGATAGAGCAGCAAGAATA 9986 | ||| ||||||||| ||| || || ||||| | ||||| |||| | Sbjct 2281 ATATATAGGCCTTGGGAAAAAGAGACCTCCATACCCATCATAAAAAGAGCTGCAAATTTG 2340 Query 9987 AGAAGTGCCATCGGTTGGTTCATCTCTCCAAACTCTAATTTGGCCAAAAGTATTTACAAC 10046 ||| ||| || |||||||| || | | ||||| || | ||| |||| | Sbjct 2341 CGAAATGCAATAGGTTGGTTTATAAATAAGGAGTCTAAATTAGGAAAATCGATTTGTCAG 2400 Query 10047 AATTTGAGGTCATTAACGGGGGAGAATTGGGGCGGCACCGTTGAGGGATACAAGAGAACT 10106 ||||| | || ||||| || || |||| || | | | | |||||| Sbjct 2401 AATTTAACATCTTTAACAGGAGAAGATTGTTCTAAGTCCATATCCAGTTTCTCAAGAACT 2460 Query 10107 GGATCAGCTCTTCATCGTTTCTCATGTTCCCGCCAAAGCAATGGGGGATTTGCTGCCCAG 10166 || ||||| || ||| | ||||||||||| || |||||| || |||| ||| || || Sbjct 2461 GGTTCAGCCCTACATAGATTCTCATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAA 2520 Query 10167 AGTCCAGTTAATTTAACCAGAATAGTTACGACAACCAGCACTCTGCAGGAAATTAGTGAG 10226 ||||| || || |||| ||||| || | || ||| ||| | | ||| | | ||| Sbjct 2521 AGTCCTGTAAAACTAACGAGAATGATTTCTACCACCGATACTTTAGAAGAATTGAATGAT 2580 Query 10227 GTGAATTATGACTTTATGTTCCA 10249 ||||||||||| |||||||| Sbjct 2581 AAAAATTATGACTTCATGTTCCA 2603 >seq34844 Length=5462 Score = 102 bits (112), Expect = 7e-18 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 10101 AGAACTGGATCAGCTCTTCATCGTTTCTCATGTTCCCGCCAAAGCAATGGGGGATTTGCT 10160 ||||| || ||||| | ||||| || |||||||| | ||||||| || |||| |||| Sbjct 2657 AGAACCGGGTCAGCATTACATCGCTTTTCATGTTCTAGACAAAGCACAGGTGGATATGCT 2598 Query 10161 GCCCAGAGTCCAGTTAATTTAACCAGAATAGTTACGACAACCAGCACTCTGCAGGAAATT 10220 || || |||||||| || ||||||||||| | | ||||| || || | ||| | Sbjct 2597 GCTCAAAGTCCAGTAAAATTAACCAGAATGATATCAACAACGGATACACTAGACGAATTA 2538 Query 10221 AGTGAGGTGAATTATGACTTTATGTTCCAATCATGCATAATTTTCTCCCAAATAAC 10276 | |||| ||||||||| || ||||| ||| || |||| | || |||||||| Sbjct 2537 AATGAGAAGAATTATGATTTCATGTTTCAAACACTTTTAATATATTCTCAAATAAC 2482 Score = 91.5 bits (100), Expect = 1e-14 Identities = 332/504 (66%), Gaps = 23/504 (5%) Strand=Plus/Minus Query 9267 AAACTAATAGAAGATCCATTATCTATAAATATACCCAAAGGGGTTAA-TGCATTAACCTT 9325 |||||| |||||||||||||||| |||||||||| || ||| ||| | || ||| | Sbjct 3533 AAACTACTAGAAGATCCATTATCATTAAATATACC-AAGGGGAATAAGTTCAGCAACAAT 3475 Query 9326 AGTAAAAAATGAGATCAAAAAGAACTTATT-CAG---GTCACAAGACAATATCAGAAACC 9381 |||||||||| |||||||| || ||| | || |||| | ||||||| || Sbjct 3474 GCTAAAAAATGAAATCAAAAATAATTTAATACACTCCGTCA----ATAATATCAAGAATA 3419 Query 9382 ATATAATACAGACAGCAGTGAAATATCTGGAAGAGGAGGAAGATAACCTATTGACCTATC 9441 |||| || | || || | |||| ||| || ||| | || |||||| | | Sbjct 3418 ATATGATTAGAATGGCTGTAACATATACAAGAGACGAAGAATACAAATTATTGAATTTCC 3359 Query 9442 TGTTGTCTATAAGACCTATGTTTCCTCGCTTCCTGAGTGAATTTAAGGAATCAACATATC 9501 || |||| | ||| | ||||| || ||| |||| |||| ||| | ||||||||| Sbjct 3358 TGACACATATACGTCCTTTATTTCCCCGATTCTTGAGCGAATATAAAAATGCAACATATC 3299 Query 9502 TAGGGATAACAGAGAGTTTAGTTGGTCTCTTCCAAAATTCAAGAACCATTCGGAATGCCT 9561 | || ||||| || |||| || | || |||||||| | || || | | | | | Sbjct 3298 TCGGAATAACCGAATCCATAGTAGGATTATTTCAAAATTCGCGTACAATAAG-ACTACAT 3240 Query 9562 TCCACAAAAAACTCA-ATAGGACCATCGATGCCATAATTATCAAAAGTGAACTAATTTCC 9620 | | ||||| | | ||| | | ||| || || ||||||||||| ||| || | Sbjct 3239 TTTTCTAAAAAATTACATAAAAAATTAGATCAAATCATCGTCAAAAGTGAAATAA-TTGC 3181 Query 9621 TATACAAAC-TTATTCAAGCATAATCTTCCTAGATCCAAC--GGAGTA-CCT---TGGGA 9673 |||| | || | | || || |||||| | |||| | || || ||||| Sbjct 3180 TATAAATACAGCACTAAA--ATTTACTTCCT-GCAGCAACTTTAATTATACTATATGGGA 3124 Query 9674 TTGTTCGGCCAGTCATGCAGATATGTTGAGGAGTGATTCGTGGGGAATAGAAATAATTGG 9733 |||||| | | ||||||||||| | | || || |||||| | || || | || Sbjct 3123 TTGTTCAAGCCGACATGCAGATATTCTTCGAAGATTATCTTGGGGAGAAAAAGTACTCGG 3064 Query 9734 TGCAACAGTTCCTCATCCAATAGA 9757 ||||||||||| ||||| || || Sbjct 3063 AGCAACAGTTCCACATCCGATGGA 3040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41386177510832