Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq34844 129 5e-26 seq121975 114 1e-21 >seq34844 Length=5462 Score = 129 bits (142), Expect = 5e-26 Identities = 231/333 (69%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 10240 AGAACTGGTTCTGCAATACATAGATTCAGTTGTTCAAGGCAGAGCTCTGGGGGTTATACT 10299 ||||| || || ||| ||||| | || ||||| || || ||| | || || ||| || Sbjct 2657 AGAACCGGGTCAGCATTACATCGCTTTTCATGTTCTAGACAAAGCACAGGTGGATATGCT 2598 Query 10300 GCACAAAGTCCAGTCAGATTAACTAGAATGATCACTACAACTAGCACACTTCAGGATATT 10359 || ||||||||||| | |||||| |||||||| | ||||| ||||| | || ||| Sbjct 2597 GCTCAAAGTCCAGTAAAATTAACCAGAATGATATCAACAACGGATACACTAGACGA-ATT 2539 Query 10360 GGA-GACAGAAACTATGACTTCATGTTTCAATCTTGCATAATATTCTCTCAAATAACTGC 10418 | || | || ||||| |||||||||||| | |||||| ||||||||||| | Sbjct 2538 AAATGAGAAGAATTATGATTTCATGTTTCAAACACTTTTAATATATTCTCAAATAACATC 2479 Query 10419 CGGTGAGTGTCATTATGGAAATAGGGAAGC--CGGATATTATCATTTCCATATCTCTTGT 10476 ||| || ||| ||| | || | | | | |||||||| |||||| ||| Sbjct 2478 CGGGGAACTACATGCTGG--TTCGGTTAACAATGTAATATATCATTTTCATATCAACTGT 2421 Query 10477 CCCGAGTGTTTAAGGGAAATAGAGGAACCGATTCTGGACACCAATGTAGAGTACAGTCAC 10536 | | ||| | || |||||||||||||| || || ||||| |||| |||| ||| Sbjct 2420 CTTAATTGTCTTAGAGAAATAGAGGAACCAATACTTGACACTCCTGTAATATACAAGCAC 2361 Query 10537 CCAGATGTCTATGAGGTTTTAAATAAATGGAAA 10569 ||| |||||| ||| | | || ||||||||| Sbjct 2360 CCAAATGTCTCTGAAATACTCAAAAAATGGAAA 2328 >seq121975 Length=4353 Score = 114 bits (126), Expect = 1e-21 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 10074 GCCTTGGGAAAGAAATGCAGTTATTCCACTCATAGAACGAGCAGCAAAGCTTAGAAATGC 10133 ||||||||||| | | | || || ||||| || |||| ||||| | ||||||| Sbjct 2289 GCCTTGGGAAAAAGAGACCTCCATACCCATCATAAAAAGAGCTGCAAATTTGCGAAATGC 2348 Query 10134 AATTGGCTGGTTCATCTCTCCAGACTCAAAGTTAGCGGAGTCAATTTATAAAAATTTATT 10193 ||| || ||||| || | || || || |||| | || |||| | | |||||| Sbjct 2349 AATAGGTTGGTTTATAAATAAGGAGTCTAAATTAGGAAAATCGATTTGTCAGAATTTAAC 2408 Query 10194 CTCTTTGACTGGAGAGGATTGGGATCGGGTAGTTTCGGGATATAAAAGAACTGGTTCTGC 10253 ||||| || ||||| ||||| | | | || | | |||||||||||| || Sbjct 2409 ATCTTTAACAGGAGAAGATTGTTCTAAGTCCATATCCAGTTTCTCAAGAACTGGTTCAGC 2468 Query 10254 AATACATAGATTCAGTTGTTCAAGGCAGAGCTCTGGGGGTTATACTGCACAAAGTCCAGT 10313 ||||||||||| ||||| | || ||| | || || ||| | || |||||||| || Sbjct 2469 CCTACATAGATTCTCATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCTGT 2528 Query 10314 CAGATTAACTAGAATGATCACTACAACTAGCACACTTCAGGATATTGGA--GACAGAAAC 10371 | | |||| |||||||| |||| || | |||| || | | | || || | ||| Sbjct 2529 AAAACTAACGAGAATGATTTCTACCAC--CGATACTTTAGAAGAATTGAATGATAAAAAT 2586 Query 10372 TATGACTTCATGTTTCAATCTTGCATAATATTCTCTCAAATAAC 10415 |||||||||||||| || ||| |||| | |||||||| || Sbjct 2587 TATGACTTCATGTTCCAGACTTTGCTAATCTAATCTCAAATTAC 2630 Score = 86.0 bits (94), Expect = 5e-13 Identities = 192/286 (67%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 8121 TGGATTAGATCTGAATGAGCTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAA 8180 ||||||||| ||||| || | || || | | || ||| || |||||||| |||| Sbjct 276 TGGATTAGACTTGAATTCACTGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAAT 335 Query 8181 GAAGGGACGGTTTTTCTCATTGATGTCCTGG-AGTCTTCGAGATTATTTTGTGGTGACTG 8239 || | | |||| | || ||||||||| || || || ||| ||||| | | | Sbjct 336 TGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTA-GATGTTACTTTGTCTTAATCG 394 Query 8240 AGTATTTAATAAAGAAACACTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATC 8299 |||| || || || |||| | ||| |||||||| | || | || ||||| || ||| Sbjct 395 AGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGATTAACCATGGCAGACGATT 454 Query 8300 TCACGACCGTGATGAGGAAGATGATGGAGAATGCAAATGGACAGGGTCTGGATGATTATA 8359 | | || | | | |||||||||||| | | | | || || ||| | || |||| Sbjct 455 TAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGTCAAGGTATAGACAATTACG 514 Query 8360 GCTATATTTCTATTGCTAATCACATTGATTATGAGAAGTGGAATAA 8405 ||| |||| ||| || ||||| | ||||| ||| |||||||| Sbjct 515 ACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGGAATAA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41894187000604