Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq378 196 7e-48 seq308 165 1e-38 seq128 156 6e-36 seq186 132 7e-29 seq520 105 1e-20 seq170 100 4e-19 seq683 96.9 5e-18 >seq378 Length=544349 Score = 196 bits (216), Expect = 7e-48 Identities = 191/238 (80%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| ||| Sbjct 509845 ACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCT 509788 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTAC 121 |||| | || ||||| ||| | ||||| | ||||| | | |||| | |||| Sbjct 509787 CGTTCATAGGGAATAATTGGAATTTCCAATCCCTAGCACGAAGGAGATTCAGCGGGTTAC 509728 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 |||| ||| || |||| || | ||| || ||| | | | ||||||||||||||||||| Sbjct 509727 CCGGGCCTTTCAGCCAGGGAG---GACACGCTGATTCCCTTAGTGTAGCGCGCGTGCGGC 509671 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||||||||||||||||||||||||||| || ||||| || |||| | ||||| Sbjct 509670 CCAGAACATCTAAGGGCATCACAGACCTGTTACTG-CTCAATCT--CGTGCGGCTAAA 509616 >seq308 Length=557069 Score = 165 bits (182), Expect = 1e-38 Identities = 166/211 (79%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| |||||||||||||| ||||| ||||||| |||||| | Sbjct 502735 GTACAAAGGGTAGGGACGTAATCAACGCGAGCTTG-TGACTTATGCTTACTGGGAATT-C 502678 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||| | | ||| | ||| |||| | || Sbjct 502677 CTCGTTTATGGGGAATAATTGCAAGCCCCCATCTCTAGCACAAAGAAGGTTCAGCGGGTT 502618 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | ||| | || | ||| || ||| | | ||||||||||||||||||| Sbjct 502617 ACCCAGGCCTTTTGGCAAGGGAG---GACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 502561 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTG 210 ||||||||||||||||||||||||||||||| Sbjct 502560 GCCCAGAACATCTAAGGGCATCACAGACCTG 502530 >seq128 Length=1156761 Score = 156 bits (172), Expect = 6e-36 Identities = 169/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| | || || ||||| || ||| ||||||||| |||||||| Sbjct 442767 GTACAAAAGGCAGGGACGTAATTAATGCAAGCTT-ATCACT-GCGCTTACTGGGAATTTC 442710 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | || |||||||| | ||||| | ||||| ||| |||| | || Sbjct 442709 -TCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGACGAAGGTTCAGCGGGTT 442651 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | ||||| | | ||| || ||| | | ||||||||| ||||||||| Sbjct 442650 ACCCAGGCCTTTTGGCCAGGAAG---GACACGCTGATTCCTTCAGTGTAGTGCGCGTGCG 442594 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||| ||| |||||||| |||||||||||| Sbjct 442593 GCCCAGAACATCCAAGTGCATCACAAACCTGTTATTGC 442556 >seq186 Length=1034478 Score = 132 bits (146), Expect = 7e-29 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| || | | || || |||||||||| || |||||||| ||||||| |||||| | Sbjct 757262 GTACAAAAGGAAAGAACTTAATCAACGCGAGTTT-ATGACTCGGGCTTACTGGGAATT-C 757319 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || |||| ||| ||||| | || || | | |||| | || Sbjct 757320 CTCGTTCATTGGGAATAATTTCAAGCCCAAATCCCTAGCATGAAGGAGATTCAGCGGGTT 757379 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || || | ||| | || | ||| | ||| | | |||||||||||||| |||| Sbjct 757380 ACCTGGGCCGTTTGGCTATGGAG---GACACACTGATTCCTTCAGTGTAGCGCGCTTGCG 757436 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||| |||||||||||||||||||||||||| Sbjct 757437 GCCCAGAACATTTAAGGGCATCACAGACCTGTTATTGC 757474 >seq520 Length=294945 Score = 105 bits (116), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| |||||||| ||||||| |||| ||||| ||| | | || |||| ||| | Sbjct 145826 AGCTT-ATGACTCGTGCTTACT-GGAAATTCCTTGTTCACGGGGAATAATTTCAACCCCC 145769 Query 90 TATCCCCATCACGATGAA-ATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGAC 148 ||||| | ||||| | | |||| || ||||||| ||| | ||||| | | | || Sbjct 145768 AATCCCAAGCACGAAGGAGATTTAGCAGGTTACCCGAGCCTTTTGGCCAGG---AAAAAC 145712 Query 149 TCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 | ||| ||| | | ||||||| |||| |||| ||||| ||||||||||||||| || Sbjct 145711 AAGCTGATTACTTAATTGTAGCGTGCGTACGGCTCAGAAAGTCTAAGGGCATCACAAACT 145652 Query 209 TGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||| | || ||| ||||| Sbjct 145651 TGTTATTGCGT-AATCTTAAGTGGC 145628 >seq170 Length=926609 Score = 100 bits (110), Expect = 4e-19 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 695777 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 695834 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 |||||| | | || |||||||| Sbjct 695835 CTCGTTCATGGGGAATAATTGCAA 695858 >seq683 Length=188875 Score = 96.9 bits (106), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||| ||||||||||| | ||| |||||| |||||||||||| ||| || ||| || Sbjct 142773 TAAAAAGAGCAGGGACGTA-TATACGTGAGCTT-ATGACTCGCGCTAACTGGGTATT-CC 142829 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT-A 120 | ||| | | || |||||| | || || | ||| | ||| ||||| | | Sbjct 142830 TGGTTAATGGGGAATAATTGCGAACCCTAATTCCTAGCACAAAGAATTTTCAGCGGGAGA 142889 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || || ||| | |||||| | ||| || ||| | | |||||||||| | |||| || Sbjct 142890 CCTGGGCCTTTAGGCCAAAAAG---GACACGCTGATTCCTTCAGTGTAGCTCACGTGTGG 142946 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | || || ||||| ||||| || || ||||||||||| Sbjct 142947 CTCAAAATATCTATGGGCAGCATAGTCCTGTTATTGC 142983 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| |||||||||||| || ||||||| |||||||||||||| |||||||||||| Sbjct 97854 TCAGTTTAGCGCGCGTGCAGCACAGAACACCTAAGGGCATCACAAACCTGTTATTGC 97798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751960333175