Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1121 161 4e-37 seq887 138 5e-30 seq292 138 5e-30 seq683 131 7e-28 seq198 102 3e-19 seq730 100 1e-18 >seq1121 Length=25326 Score = 161 bits (178), Expect = 4e-37 Identities = 221/314 (70%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT--- 461 || ||||||||| |||||||||||||||||||||||| | |||||| |||||| | Sbjct 10394 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGTCTTGT 10453 Query 462 -CAAACCCGTGCGCGTAATGAAAGTGAACG------------------GAGGTGGGAACC 502 || ||| ||| |||||||||||| | | | ||||| || Sbjct 10454 TCAGGCCCAGAGGCGCAATGAAAGTGAAGGACGCCCCAGTCGGTGTCTGCGTTGGGATCC 10513 Query 503 CGTGA-----------GGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 || | ||| |||||| || || ||| | | || | ||| | Sbjct 10514 CGGGGCCGCGAGTCCCGGGCGCACCAACGGCCCGTCCCGTCCGCCACGTCGGTGGGACGG 10573 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 || ||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 10574 AGCGAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAGGC 10633 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| | | Sbjct 10634 CAGAGGAAACTCTGGTGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACCT 10693 Query 670 GGGTATAGGGGCGA 683 ||||||||||||| Sbjct 10694 TGGTATAGGGGCGA 10707 Score = 118 bits (130), Expect = 4e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||||||| |||||| |||| || |||||| | | |||| |||||| Sbjct 9787 GAGTCGGGTTGTTTGGGAGTGCAGCCCTAAGCAGGTGGTAAACTCCACCTAAGACTAAAT 9846 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | |||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 9847 ACGGCCGTGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 9906 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 9907 AGAGAGTTCAAGAGTACGTGAAA 9929 >seq887 Length=28448 Score = 138 bits (152), Expect = 5e-30 Identities = 109/131 (83%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 9702 AAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAG 9643 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||| Sbjct 9642 GGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGG 9583 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 9582 TATAGGGGCGA 9572 Score = 96.9 bits (106), Expect = 1e-17 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 87 TCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| ||||||||| | ||| ||||||||||||| ||||||| |||| ||||| ||| Sbjct 10519 TCTAAGGCTAAATAT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGA 10461 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| |||||| | |||||||| || || |||||||| Sbjct 10460 AAAGAACTTTGAAGAGAGAGTTTAAGAGTACGTGAAA 10424 >seq292 Length=446083 Score = 138 bits (152), Expect = 5e-30 Identities = 109/131 (83%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 107381 AAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAG 107440 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||| Sbjct 107441 GGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGG 107500 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 107501 TATAGGGGCGA 107511 Score = 131 bits (144), Expect = 7e-28 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| ||| ||||| | | ||||| ||||||| Sbjct 106517 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGCGGGTGGTAAGCTCCATCTAAGGCTAAAT 106576 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 106577 A-TGACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 106635 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 106636 GAGAGAGTTCAAGAGTACGTGAAA 106659 >seq683 Length=188875 Score = 131 bits (144), Expect = 7e-28 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 ||||||| || |||||||||||||||||||||| ||||||||| ||| |||| || Sbjct 158803 TAAGAGCGTACACGTTGGGACCCGAAAGATGGTGATCTATGCCTGGTCAGGACGAAGTCA 158744 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 | |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||| Sbjct 158743 GGGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGG 158684 Query 672 GTATAGGGGCGA 683 || ||||||||| Sbjct 158683 GTGTAGGGGCGA 158672 Score = 120 bits (132), Expect = 1e-24 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || |||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 84677 AAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACAAAGTCAG 84736 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||| ||| |||||| | |||| ||||| ||||||||||||||||| | |||| Sbjct 84737 GAAAAACCCTGATGGAGGTCCCTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGG 84796 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 84797 TATAGGGGCGA 84807 Score = 116 bits (128), Expect = 2e-23 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 ||||||| || ||||||||||||||||||||||||||||| || || ||| || Sbjct 110653 TAAGAGCGTATACGTTGGGACCCGAAAGATGGTGAACTATGCTTGGTCAGAACAAAGTCA 110712 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 ||||| ||| |||||| || |||| ||||| |||||||||||||||||| | ||| Sbjct 110713 AGGGAAATCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAGAACTGG 110772 Query 672 GTATAGGGGCGA 683 ||||||||| || Sbjct 110773 GTATAGGGGTGA 110784 Score = 100 bits (110), Expect = 1e-18 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| |||||| |||||||||||||| |||||| |||| ||| ||| |||| Sbjct 100934 AGAGCATACATGTTGGCACCCGAAAGATGGTAAACTATCCCTGGTCAGGACAAAGTCAGA 100993 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||| ||| ||||| || |||| ||||| ||||||| ||||||||| | | ||| Sbjct 100994 AAAAACCCTGAAGGAGGTCCGTAGCGATTCTGACGTGCAAGTCGATCGTCGGAACTAGGT 101053 Query 674 ATAGGGGCGA 683 || |||| || Sbjct 101054 ATTGGGGTGA 101063 Score = 93.3 bits (102), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||| | | || ||||||| || || | ||| || ||| ||||||||||| | || Sbjct 49632 GTTGATCGAGAGTGCAGCTGTATGAGGTTGATAAGCTTTATCTGAAGCTAAATAT-GACC 49574 Query 107 A-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | |||||| Sbjct 49573 ACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAG 49514 Query 166 TTAAAAAGCACGT 178 || || || |||| Sbjct 49513 TTCAAGAGTACGT 49501 Score = 86.0 bits (94), Expect = 3e-14 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 87 TCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| ||||||||| | ||| |||||||||||| ||||||| |||| ||||| ||| Sbjct 159619 TCTAAGGCTAAATAT-GACCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGA 159561 Query 146 AAAGCACTTTGGAA-AGAGAGTTAAAAAGCACGTGAAA 182 |||| ||||| ||| |||||||| || || |||||||| Sbjct 159560 AAAG-ACTTTTGAAGAGAGAGTTCAAGAGTACGTGAAA 159524 Score = 84.2 bits (92), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||| |||| || || ||||||||||| ||| |||| | | ||||| ||| |||| Sbjct 100127 AGTCAGGTTGCTTAAGAGTGCAGCTCTAAGCGGGTTGTAAGCTACATCTAAGGCTCAATA 100186 Query 101 TTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || ||| |||||| ||||| ||||||| || | ||||| | ||||| || | | | Sbjct 100187 -TGACCACGAGACCAGTAGCGAACAAGTACCGTAAGGGAAAGTTAAAAAGAACCTCGAAG 100245 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 100246 AGAGAGTTTAAGAGTACGTGAAA 100268 Score = 82.4 bits (90), Expect = 3e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 48799 AAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAG 48740 Query 613 AGGAAACTCTGGTGGAGG 630 |||||| ||| |||||| Sbjct 48739 GGGAAACCCTGATGGAGG 48722 Score = 78.8 bits (86), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||| || ||||||||||| || | ||| ||| ||||| ||||||| Sbjct 83815 GAGTTGGGTTGCTTGAGAGTGCAGCTCTAAGCAGGTGTTAAGCTTCATCTAAGGCTAAAT 83874 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || | | |||||| ||||| |||||| | | ||||| |||| | |||||| | Sbjct 83875 A-TGACTACGAGACCAATAGCAAACAAGTGACTTAAGGGAAAGTTGAAGAAAACTTTGAA 83933 Query 159 AAGAGAGTTAAAAAGCACGT 178 || |||||| || || |||| Sbjct 83934 AAAAGAGTTTAAGAGAACGT 83953 >seq198 Length=593688 Score = 102 bits (112), Expect = 3e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA-GAGACCGATA 117 ||||||||||| || ||| | | | ||||| ||| |||| || ||| |||||||||| Sbjct 554779 TGCAGCTCTAAGCAGGTGGTGAGCTCCATCTAAGGCTGAATA-TGACCACGAGACCGATA 554837 Query 118 GCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACG 177 ||| ||||||| |||| |||| ||||||| |||||| |||||||||| || || ||| Sbjct 554838 GCGAACAAGTACCGTGAGAAAAAGTTGAAAAGAACTTTGAAAAGAGAGTTCAAGAGTACG 554897 Query 178 TGAAA 182 ||||| Sbjct 554898 TGAAA 554902 >seq730 Length=86070 Score = 100 bits (110), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| || ||| | | | ||||| |||||| Sbjct 11390 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGCCGGTGGTGAGCTCCATCTAAGACTAAAT 11331 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || | | ||||| ||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 11330 A-TGACAACAAGACCAATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTATGAA 11272 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||| || || |||||||| Sbjct 11271 AAGAGAGTTTAAGAGTACGTGAAA 11248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079883204750