Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq128 176 7e-42 seq182 152 8e-35 seq683 145 1e-32 seq378 98.7 2e-18 seq186 96.9 6e-18 seq308 93.3 7e-17 >seq128 Length=1156761 Score = 176 bits (194), Expect = 7e-42 Identities = 108/115 (94%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 442381 TATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAATCAGACAAATCGCTCCACCAA 442322 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 442321 CTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGT 442267 Score = 91.5 bits (100), Expect = 2e-16 Identities = 84/104 (81%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||| Sbjct 442616 TCCTTCAGTGTAGTGCGCGTGCGGCCCAGAACATCCAAGTGCATCACAAACCTGTTATTG 442557 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | | || |||| || ||| ||||||| |||||| Sbjct 442556 -CTCGATC-TCGTGCGGCTAGACGCCGTCTGTCCCTCGAAGAAG 442515 >seq182 Length=905841 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||| | ||||||||||||||||| || |||| Sbjct 624992 CTATTTAGCAGGCTAGAGTCTCGTTCGTTATTGTAATTAACCAGACAAATCGCTTTACCA 624933 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||| ||||||||||||||||||||||| || Sbjct 624932 ACTAAGAACGGTCATGCACCACCACCCACCAAATCAAGAAAGAGCTATCAATCTTTC 624876 >seq683 Length=188875 Score = 145 bits (160), Expect = 1e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 ||| |||||| || |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 143159 ATTGAGCAGGATACAGTCTCGTTTATTATCGAAATTAACCAGACAAATCACTCCACCAAC 143218 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||||| || ||| | |||||||||||||||||||||||| Sbjct 143219 TAAGAGCGGCCATGCACCAACAACCACCAACTCAAGAAAGAGCTATCAATCTGTC 143273 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||| |||||||||||| || ||||||| |||||||||||||| ||||||||||| Sbjct 97858 TCCTTCAGTTTAGCGCGCGTGCAGCACAGAACACCTAAGGGCATCACAAACCTGTTATTG 97799 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | | || || |||| || ||| |||||||||||||| Sbjct 97798 CTT--AATCTCGTGCGGCTAGACGCCGTCTGTCCCTCTAAGAAG 97757 >seq378 Length=544349 Score = 98.7 bits (108), Expect = 2e-18 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 509695 TCCCTTAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTACTG 509636 Query 72 CCTCAAACT 80 ||||| || Sbjct 509635 -CTCAATCT 509628 >seq186 Length=1034478 Score = 96.9 bits (106), Expect = 6e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 757414 TCCTTCAGTGTAGCGCGCTTGCGGCCCAGAACATTTAAGGGCATCACAGACCTGTTATTG 757473 Query 72 C 72 | Sbjct 757474 C 757474 >seq308 Length=557069 Score = 93.3 bits (102), Expect = 7e-17 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502583 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 502530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796757970045