Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq683 336 4e-90 seq520 248 1e-63 seq1121 141 2e-31 >seq683 Length=188875 Score = 336 bits (372), Expect = 4e-90 Identities = 248/285 (87%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| || | |||| ||||||||||||||||||||||||||||| Sbjct 168145 TACTGAGCAGGATTACTATCGCAACGACAAAGTCATCAGTAGGGTAAAACTAACCTGTCT 168204 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||| || | ||||||||||||| |||||| | Sbjct 168205 CACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGC 168264 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 168265 GAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 168324 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 168325 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT-TC 168383 Query 239 CTCAAA---TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 || ||| ||| || || |||||||||||||||| ||||| Sbjct 168384 CTGAAAACTCTTCAAGTGA--AAAGGATCGATAGGCCGTGCTTTC 168426 Score = 262 bits (290), Expect = 7e-68 Identities = 201/237 (85%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| ||||||| |||| |||| ||||||||||||||||||||||||||||| Sbjct 106955 TACTGAGCAGAATTACTATTGCAACGACAAAGTCATCAGTAGGGTAAAACTAACCTGTCT 106896 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || || |||||||||||||||||||||||| || |||||| |||||||| |||||| | Sbjct 106895 CACAACCGTCTAAACCCAGCTCACGTTCCCTGTTGGTGGGTAAACAATCCGACGCTTGAC 106836 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| ||||| | |||||||| || || ||||||||||||||||||| ||||| || Sbjct 106835 GAATTTTGCTTTGCAATGATAGGCAGGGCTGACATCGAAGGATCAAAAAAAGACGTCACT 106776 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 | |||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| Sbjct 106775 TTAAACGCTTGGCCACCACAAGCCGGTTATCCTTGTGGTAACTTTTCTGACACCTCT 106719 Score = 251 bits (278), Expect = 1e-64 Identities = 225/277 (81%), Gaps = 9/277 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| || | |||| ||||||||||||||||||||||||||||| Sbjct 147249 TACTGAGCAGGATTACTATCGCAACGACAAAGTCATCAGTAGGGTAAAACTAACCTGTCT 147308 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||| |||||| || ||||||| |||| | || | | |||||| ||| |||||| | Sbjct 147309 CACGACAGTCTAAGCCTAGCTCACATTCCTTGTTGGCGT-TGAACAGTCCGACGCTTGGC 147367 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||| | |||||||||||||||||||||||||||||||||||| || ||||| Sbjct 147368 AAATTCTGCTTTGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACATCGCT 147427 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||| |||||||| ||||||||||||||| ||||||||| |||| || ||||||| | Sbjct 147428 ATGAGCGCTTGGCCACCACAAGCCAGTTATTTCTGTGGTAATTTTTTTGACACCTCT-TC 147486 Query 239 CTCAAA---TTTCGAGGGACTAAAGGATCGATAGGCC 272 || ||| || || || |||||||||||||||| Sbjct 147487 CTGAAAACTCTTTAAGTGA--AAAGGATCGATAGGCC 147521 Score = 212 bits (234), Expect = 1e-52 Identities = 215/276 (78%), Gaps = 7/276 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| || | |||| ||||| || ||||| ||||| || ||||| Sbjct 94704 TACTTAGCAGGATTACTATCAGAACGACAAAGTCATAAGAAGGGTTAAACTTACTTGTCT 94645 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || || |||||| || |||||||||| ||| || | ||||||||||||| |||||| | Sbjct 94644 CACGATAGTCTAAGCCTAGCTCACGTTTCCTGTTGGCGGGTGAACAATCCGACGCTTGGC 94585 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||||| |||||| ||| |||||||||| |||||||||||| | ||||| || Sbjct 94584 GAATTCTGCTTCGCAATGATA-GAAAAGCCGACATCAAAGGATCAAAAAACGACGTCACT 94526 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||| ||| || ||||||| | |||| | ||||||||||||||| ||| ||| | Sbjct 94525 ATGAACTCTTAGCCAGCACAAGCTACTTATACGTGTGGTAACTTTTCTTACACTTCTTTC 94466 Query 239 CTCAAAT--TTCGAGGGACTAAAGGATCGATAGGCC 272 |||| ||| || || |||||| |||| |||| Sbjct 94465 TGAAAATTCTTCAAGTGA--AAAGGACCGATGGGCC 94432 >seq520 Length=294945 Score = 248 bits (274), Expect = 1e-63 Identities = 197/236 (83%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGAC--GGTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||||||| ||||| |||| ||| | | ||||||||||| ||||||||| ||| Sbjct 163618 TACTAAGCAAGATTACTATTGCAATGACAAGTTTATCAGTAGGGTGAAACTAACCCATCT 163559 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||| |||||| | ||||||||||||||| || ||| ||||||||| |||||||| | Sbjct 163558 CACGACCGTCTAATCTCAGCTCACGTTCCCTGTTGGTGAGTGAACAATGCAACGCTTGGC 163499 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||| |||||| ||||||||||||||||||| || | ||| Sbjct 163498 AAATTCTGCTTCGCAATGATAGAAAGAGCTGACATCGAAGGATCAAAAATTGACATTGCT 163439 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||| Sbjct 163438 ATGAACGCTTGGCTGCCACAAGCCAGTTATCTCTGTGGTAACTTGTCGGACACCTC 163383 >seq1121 Length=25326 Score = 141 bits (156), Expect = 2e-31 Identities = 98/110 (89%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| || | |||| ||||||||||||||||||||||||||||| Sbjct 16336 TACTGAGCAGGATTACTATCGCAACGACAAAGTCATCAGTAGGGTAAAACTAACCTGTCT 16277 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16276 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 16227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854353477920