Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq378 197 3e-48 seq128 174 3e-41 seq308 170 4e-40 seq186 138 2e-30 seq683 105 1e-20 seq170 105 1e-20 seq520 100 5e-19 >seq378 Length=544349 Score = 197 bits (218), Expect = 3e-48 Identities = 178/222 (80%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 509628 AGATTGAG-CAGTAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 509686 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| | || || || || | || |||| | |||| | |||||| | | || || Sbjct 509687 ACTAAGGGAATCAGCGTGTCCT---CCCTGGCTGAAAGGCCCGGGTAACCCGCTGAATCT 509743 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||| ||||| | ||| |||||||| | | |||||||||| || |||||| Sbjct 509744 CCTTCGTGCTAGGGATTGGAAATTCCAATTATTCCCTATGAACGAGGAATTCCCAGTAAG 509803 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 |||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 509804 CGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGT 509845 >seq128 Length=1156761 Score = 174 bits (192), Expect = 3e-41 Identities = 197/258 (76%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||| ||||||| |||| || ||||| || | | ||| ||||||||||| |||| Sbjct 442515 CTTCTTCGAGGGACAGACGGCGTCTAGCCGCACGA-GATCGAG-CAATAACAGGTTTGTG 442572 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| ||| ||||||||||||||||||||| ||||||||| || || || || | | Sbjct 442573 ATGCACTTGGATGTTCTGGGCCGCACGCGCACTACACTGAAGGAATCAGCGTGTCCTT-- 442630 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | ||||| |||| |||||||| | | || || |||||||| ||||| | | ||| Sbjct 442631 -CCTGGCCAAAAGGCCTGGGTAACCCGCTGAACCTTCGTCGTGCTAGGGATTGGGGCTTG 442689 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||| ||| || ||||||||| || || ||| || || ||| Sbjct 442690 CAATTATTCCCCATGAACGAGAAATTCCCAGTAAGCGC-AGTGATAAGCTTGCATTAATT 442748 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||||||| |||||| Sbjct 442749 ACGTCCCTGCCTTTTGTA 442766 >seq308 Length=557069 Score = 170 bits (188), Expect = 4e-40 Identities = 165/208 (79%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 502530 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGC 502589 Query 181 GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 | || | || ||||| || |||| |||||||| | | || || | ||||| | || Sbjct 502590 GTGTCC-TC-CCTTG-CCAAAAGGCCTGGGTAACCCGCTGAACCTTCTTTGTGCTAGAGA 502646 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | | | ||||||||||| | | | |||||||||| || ||||||| |||| ||| Sbjct 502647 TGGGGGCTTGCAATTATTCCCCATAAACGAGGAATTCCCAGTAAGCATAAGTCACAAGCT 502706 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| ||||||||| Sbjct 502707 CGCGTTGATTACGTCCCTACCCTTTGTA 502734 >seq186 Length=1034478 Score = 138 bits (152), Expect = 2e-30 Identities = 160/215 (74%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | Sbjct 757474 GCAATAACAGGTCTGTGATGCCCTTAAATGTTCTGGGCCGCAAGCGCGCTACACTGAAGG 757415 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || | || | || | ||| | || | ||||| | | || ||| || || Sbjct 757414 AATCAGTGTGT---CCTCCATAGCCAAACGGCCCAGGTAACCCGCTGAATCTCCTTCATG 757358 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | ||| ||||||| | | |||||||||| || ||||||| || ||| Sbjct 757357 CTAGGGATTTGGGCTTGAAATTATTCCCAATGAACGAGGAATTCCCAGTAAGCCCGAGTC 757298 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||||||||||| || | | || |||||| Sbjct 757297 ATAAACTCGCGTTGATTAAGTTCTTTCCTTTTGTA 757263 >seq683 Length=188875 Score = 105 bits (116), Expect = 1e-20 Identities = 185/260 (71%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||| ||| |||| || || ||| ||| || || |||||||||| || || Sbjct 143024 CTTCTTAGAGAGACATACGGCGTCTAGACGAAC-AAGATTAAG-CAATAACAGGACTATG 142967 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| ||||| || || ||| |||| | |||||||||| || || || || | | Sbjct 142966 CTGCCCATAGATATTTTGAGCCACACGTGAGCTACACTGAAGGAATCAGCGTGTCCTT-- 142909 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTT--AAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| |||| | ||| || | | ||| ||| | ||||| || || | | Sbjct 142908 -TTTGGCCTAAAGGCCCAGGT-CTCCCGCTGAAAATTCT-TTGTGCTAGGAATTAGGGTT 142852 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||| | | | ||| |||||| || ||| |||||| ||||| ||| | ||| | Sbjct 142851 CGCAATTATTCCCCATTAACCAGGAATACCCAGTTAGCGCGAGTCATAAGCTCACGTATA 142792 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||| |||| || Sbjct 142791 -TACGTCCCTGCTCTTTTTA 142773 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| || ||||| || || | |||||||||||| |||| Sbjct 97757 CTTCTTAGAGGGACAGACGGCGTCTAGCCGCACGAGATT--AAGCAATAACAGGTTTGTG 97814 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||| ||||||| || |||||||||||| ||||| Sbjct 97815 ATGCCCTTAGGTGTTCTGTGCTGCACGCGCGCTAAACTGA 97854 >seq170 Length=926609 Score = 105 bits (116), Expect = 1e-20 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||||||||||| | | | |||||||||| || |||||||||| ||||| ||| ||||||| Sbjct 695858 TTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTG 695799 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 695798 ATTACGTCCCTGCCCTTTGTA 695778 >seq520 Length=294945 Score = 100 bits (110), Expect = 5e-19 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||| || ||||||||||||||| ||||| |||| |||| ||||||| | | Sbjct 145643 GCAATAACAAGTTTGTGATGCCCTTAGACTTTCTGAGCCGTACGCACGCTACAATTAAGT 145702 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || | ||| | | ||||| |||| |||||| || | || ||| ||||| Sbjct 145703 AATCAGCTTGTTTTT---CCTGGCCAAAAGGCTCGGGTAACCTGCTAAATCTCCTTCGTG 145759 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | | ||| ||||||| | | | ||| |||||| | ||||||| || ||| Sbjct 145760 CTTGGGATTGGGGGTTGAAATTATTCCCCGTGAACAAGGAATTTCCAGTAAGCACGAGTC 145819 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 || ||| ||| || ||| | |||||||| Sbjct 145820 ATAAGCTTAAGTTAATAACGCCTTCACCCTTTGT 145853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947148424960