Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2771 138 2e-30 seq2400 138 2e-30 seq1708 138 2e-30 seq2441 75.2 2e-11 >seq2771 Length=403117 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 367944 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 367885 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 367884 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 367834 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||| ||||| | |||| Sbjct 374332 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCGGTTATCG-CTCA 374274 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 374273 ATC-TCATTTTGCTGAACACAAATTGTCC 374246 >seq2400 Length=203731 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 6293 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 6352 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 6353 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 6403 Score = 105 bits (116), Expect = 1e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||| |||||||| ||||| ||| | |||||||||| Sbjct 7960 GTCACGTTCGTTATCGGAATTAACCGCACAAATCATTCCACGAACAGAATACGGCCATGC 8019 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| ||||||| | |||| ||| Sbjct 8020 ACCACTACCCTTAATTTTGAGAAAGAGCTATTTATCTGTCTTACCTCAATA 8070 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 6045 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 6103 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 6104 ATC-TCATTTTGCTGAACACAAATTGTCC 6131 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 7710 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 7768 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 7769 ATC-TCATTTTGCTGAACACAAATTGTCC 7796 >seq1708 Length=65637 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 2712 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 2653 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 2652 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 2602 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 11447 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 11388 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 11387 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 11337 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 20168 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 20109 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 20108 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 20058 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 28987 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 28928 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 28927 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 28877 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 37790 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 37731 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 37730 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 37680 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 46562 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 46503 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 46502 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 46452 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 55289 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 55230 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 55229 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 55179 Score = 138 bits (152), Expect = 2e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 64074 GTCACGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 64015 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATA 269 ||||| |||| || | |||||||||||| |||||||| | |||| ||| Sbjct 64014 ACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTTACCTCAATA 63964 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 2962 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 2904 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 2903 ATC-TCATTTTGCTGAACACAAATTGTCC 2876 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 11697 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 11639 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 11638 ATC-TCATTTTGCTGAACACAAATTGTCC 11611 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 20418 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 20360 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 20359 ATC-TCATTTTGCTGAACACAAATTGTCC 20332 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 29237 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 29179 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 29178 ATC-TCATTTTGCTGAACACAAATTGTCC 29151 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 38040 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 37982 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 37981 ATC-TCATTTTGCTGAACACAAATTGTCC 37954 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 46812 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 46754 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 46753 ATC-TCATTTTGCTGAACACAAATTGTCC 46726 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 55539 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 55481 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 55480 ATC-TCATTTTGCTGAACACAAATTGTCC 55453 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 64324 CATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCG-CTCA 64266 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCC 105 | | || || |||| | | ||| |||| Sbjct 64265 ATC-TCATTTTGCTGAACACAAATTGTCC 64238 >seq2441 Length=238134 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCT 260 ||||||||||||||||||||||| |||| || | |||||||||||| |||||||| | Sbjct 224684 AACTAAGAACGGCCATGCACCACTACCCTTAATTTTGAGAAAGAGCTATTAATCTGTCTT 224625 Query 261 CCCTCGATA 269 |||| ||| Sbjct 224624 ACCTCAATA 224616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796775523051