Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3071 405 4e-108 seq3141 185 7e-42 >seq3071 Length=929925 Score = 405 bits (448), Expect = 4e-108 Identities = 1211/1863 (65%), Gaps = 53/1863 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| || || | || | ||||| | || |||||||| ||||| Sbjct 832871 TCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTCCGGTT 832930 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 ||||| || ||| | ||||| || ||||| | | ||| | || || || || Sbjct 832931 TTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGGGTTCC 832990 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || || || || || |||||||| ||| |||||| | || || || || ||||| Sbjct 832991 GCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGGCCATT 833050 Query 65258 TCAATGA----TACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 | ||| | |||| || || ||||| || || ||||| || || | | Sbjct 833051 TTGATGCAGGTTTTGACG----GAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATGTG 833106 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | || || || || |||| ||||| || || | || || || || ||| Sbjct 833107 CTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTCAT 833166 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || ||||| | | ||| | || | || | | || | |||| ||| || Sbjct 833167 GTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACCTG 833226 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||||||| || || ||| |||| |||||| ||| ||||| |||||||| Sbjct 833227 GAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGATTC 833286 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || ||||| || || || || |||||||| || |||| | | ||||| Sbjct 833287 GTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAGTT 833346 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTA 65611 ||| | ||||| | | | || || | | | | |||||| ||||| |||| | Sbjct 833347 TCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGAT-- 833404 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | | | | | |||||| || | |||||| | || | || |||| | || Sbjct 833405 --GGGGCCTT----GTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCA 833458 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | | ||||| ||| |||| || ||||| || |||||| | |||||| || | Sbjct 833459 TCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCG 833518 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | || ||||| ||||| || | | || || | | || || |||||||||||||| Sbjct 833519 TAGTAGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGG 833578 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 | | |||||||| || | |||||||| || || || || || ||||| || || ||| Sbjct 833579 AAGCGCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGA 833638 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 |||| ||||| || | ||||| || || |||||||| ||||| |||||||| ||| Sbjct 833639 CGCATGTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTC 833698 Query 65912 AAATTGCGTGTCACCACATGCACGATACGTCGCAATTG---TTC--GAAATCAAAATGTT 65966 | ||| ||| || | | || || || ||| ||| ||| ||| Sbjct 833699 AGATTTTTTGTGACTATTTTA--GAGACTTCC---TTGAGCTTCTGGAAGTCA------- 833746 Query 65967 TAGGACGA-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 || ||| || || || |||||| || | || | || || | |||| Sbjct 833747 TACGACTTGTCCGGTTTG---------ACAAACATGTTGACCGCGATCGAGGCCAAGTTG 833797 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 || || || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 833798 CACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACAC 833857 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 ||||||||| | ||||| || || ||||| || ||||| || |||||||||| |||| Sbjct 833858 TTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATG 833917 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 ||||| || ||||| || || ||||| ||||| ||| ||| ||| | | ||||| Sbjct 833918 TACGGCACTCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTG 833977 Query 66206 ACCGTACG----TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261 ||| |||| || || ||| | || ||| ||| ||| | || | ||||| Sbjct 833978 ACCTTACGAATGTAGCGTCCTTCGTTCTCGTACGTCGTGTAC----AGCTTCTCGAACTC 834033 Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 |||||||| ||| | || | ||||| | ||| || |||||||| |||| || | Sbjct 834034 CTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTC 834093 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || || || ||| || ||||| || ||||| || |||||||| | || || Sbjct 834094 GTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCG 834153 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || |||||| ||||| ||||| |||||| | ||||||||||| || | Sbjct 834154 AGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCC 834213 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| |||||||| ||||| || |||| || || ||| ||| || ||||| || Sbjct 834214 GTGCCACGGTTCCAGATAGATCGCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAAC 834273 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 ||| || || |||||| | || | || |||||| || |||||||| || | || || Sbjct 834274 GTACCGCGCCGTGTTGTTGTAAACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTT 834333 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 || ||| | ||| | || ||||| || ||| ||||||| ||| || ||||| Sbjct 834334 CGTTCCGGCAATGTACGTGCCCTTCGCCCGGATGCAGTGCACATTCACACCGATTCCACC 834393 Query 66622 GGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 |||| ||| ||||| || || | || || | | || ||||| || || Sbjct 834394 CGCCGACTTGGAGATCAACGCGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATC 834453 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 | | || |||| ||| |||| || || || || | ||||| |||| || Sbjct 834454 GTCGCTCATCGTCAACAGGAAGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAA 834513 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 | ||| || | |||||||||||||| | |||| ||||||||||| ||| | Sbjct 834514 CATGGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGC 834573 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCG 66861 || ||||||| || ||||| || | || |||||||| | || || || || Sbjct 834574 CGCGTCAATGTCCAGCCCGTGAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACG 834633 Query 66862 TTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAA 66921 || |||| | ||||||| | || | ||| || || ||||| ||||||| ||||| Sbjct 834634 CTCCACCACCTTGCCCTTGATCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAA 834693 Query 66922 GTA 66924 ||| Sbjct 834694 GTA 834696 >seq3141 Length=1574671 Score = 185 bits (204), Expect = 7e-42 Identities = 207/274 (76%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| || ||||||||||| |||||||||||| |||| || ||| || |||| Sbjct 1345015 AGGCCGAAGCCTCGTTCTGGACGGTCGAGGAGGTCGATCTGTCGAAGGACTTGGGCGACT 1345074 Query 61166 GGGAGC-GTTTA--TCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| | | | ||| ||||| | || || || || ||| |||| ||||| | Sbjct 1345075 GGGAGAAGCTCAAGTCG---GGTGAGAAGCACTTTATCTCGCACGTGCTGGCCTTCTTCG 1345131 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||||||||||| ||||| || ||||| | | || || ||| ||||||||||| | Sbjct 1345132 CCGCTTCGGACGGCATCGTGAACGAGAACCTGGTCGAGCGGTTCAGCCAGGAGGTGCAGG 1345191 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || |||||||||| || ||||||||||||||||| || |||||||| || ||| |||| Sbjct 1345192 TGACGGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCGATGGAGAACGTGCACAGCGAGA 1345251 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||| | || || || || |||||| |||| Sbjct 1345252 TGTACTCGCTGCTGATTGACACCTACATCCGGGA 1345285 Score = 181 bits (200), Expect = 8e-41 Identities = 365/538 (68%), Gaps = 5/538 (1%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||||||| || ||||||||| | || |||||| || || || ||||| | || Sbjct 1345478 TTGTTCAACGCGATCGAGACGCTGCCCTGTGTGAAGAAAAAGGCTGACTGGGCGATGAAC 1345537 Query 61456 TGGATCACCAGTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | || | ||| | || ||||| || || || | || || || | ||||| Sbjct 1345538 TGGATCTCGAGCAAGCACGCCAAC-TTTGGCGAGCGCGTGGTCGCTTTCGCCGCCGTCGA 1345596 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || ||||| || || || | ||||| ||| | ||||| ||||| || || Sbjct 1345597 GGGCATCTTCTTCAGCGGCAGCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTCAT 1345656 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 |||||| ||||||||| || ||| |||| || ||||||||||| | || || || Sbjct 1345657 GCCCGGCCTGACCTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTCCACACCGACTT 1345716 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 ||| | | | ||| ||||| ||||| | || || | || || ||| || Sbjct 1345717 TGCCTGTCTCATGTTC---CGCTACCTGGTCCAGAAGCCCTCCAAAGAACGCGTGCTCGA 1345773 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || | || || || || ||||| ||||| || || || | || |||||||| Sbjct 1345774 AATCATCCGCGAAGCCGTCGTCATCGAGCAGGAGTTCCTCACGAAAGCCCTGCCCGTCGA 1345833 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 || |||||||||| || | || ||||||||||| || || ||||| || || || || Sbjct 1345834 CCTGCTCGGCATGAACTGCGAGCTGATGTCGCAGTACATCGAGTTTGTCGCGGATCGCCT 1345893 Query 61815 GTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 || |||| |||| | | |||||| || || || ||||| || |||||||| Sbjct 1345894 CCTGCTCGAGCTGGGCAACGAAAAGATCTACAACACCAAGAACCCGTTCAGCTTCATGGA 1345953 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 | || ||||| || || |||||||| || |||||||| || ||||| || ||| Sbjct 1345954 GTTCATCTCGCTCGAGGGAAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAA 1346011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552635363440