Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9788 219 6e-55 >seq9788 Length=50654 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 11536 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 11479 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 11478 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 11419 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 11418 ACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 11362 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 11361 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 11305 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 11304 AGCCGCCTGTCCCTCTAA 11287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751887963985