Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15313 136 2e-29 seq15278 136 2e-29 seq9788 136 2e-29 >seq15313 Length=84324 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 76540 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 76481 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 76480 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 76421 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 76420 ATAGGGGCGA 76411 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| ||||||| Sbjct 77442 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 77383 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 77382 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 77324 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 77323 GAGAGAGTTCAAGAGTACGTGAAA 77300 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC----- 462 ||||||||| |||||||||||||||||||||||| || |||||| ||||| || Sbjct 76725 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTACGCGAGTCATTGGGACTCTAGCG 76666 Query 463 AAACCCGTGCGCGTAATGAAAGTGAA 488 | ||| |||||||||||||||| Sbjct 76665 ATACCTAAAGGCGTAATGAAAGTGAA 76640 >seq15278 Length=77882 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 36524 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 36465 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 36464 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 36405 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 36404 ATAGGGGCGA 36395 Score = 127 bits (140), Expect = 9e-27 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| || || |||| |||||| |||| |||||| | | ||||| ||||||| Sbjct 37426 GAGTCGGGTTGCTTAAGAGTGCAACTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 37367 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 37366 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 37308 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 37307 GAGAGAGTTCAAGAGTACGTGAAA 37284 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC----- 462 ||||||||| |||||||||||||||||||||||| || |||||| ||||| || Sbjct 36709 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTACGCGAGTCATTGGGACTCTAGCG 36650 Query 463 AAACCCGTGCGCGTAATGAAAGTGAA 488 | ||| |||||||||||||||| Sbjct 36649 ATACCTAAAGGCGTAATGAAAGTGAA 36624 >seq9788 Length=50654 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 14331 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 14390 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 14391 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 14450 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 14451 ATAGGGGCGA 14460 Score = 134 bits (148), Expect = 6e-29 Identities = 126/158 (80%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||| |||||| |||| |||||| | | ||||| ||||||| Sbjct 13439 GAGTCGGGTTGCTTGAGAGTGCATCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 13498 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 13499 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 13557 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || |||||||| ||| || || || Sbjct 13558 GAGAGAGTTCAAGAGTACGTGAAACCGTTCAAGGGTAA 13595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079670120450