Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq15278 307 3e-81 seq10689 304 4e-80 seq10555 304 4e-80 seq9788 168 2e-39 seq15313 136 1e-29 seq10510 120 1e-24 seq10882 113 1e-22 seq10123 105 2e-20 >seq15278 Length=77882 Score = 307 bits (340), Expect = 3e-81 Identities = 173/175 (99%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27286 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 27345 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 27346 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTT 27405 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27406 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 27460 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 34753 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGT 34812 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| |||||||||||||||||||||||||| Sbjct 34813 TGACATTCAGAGCATTGGGCAGAAATCACATTGCGTCAACA 34853 >seq10689 Length=41669 Score = 304 bits (336), Expect = 4e-80 Identities = 224/260 (86%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 ||||| | | || ||||||| ||||||| | ||||||||||||||| ||| | Sbjct 24638 TCCGCCTAACCGAGTAAGTAAGGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTG 24697 Query 234 CGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | ||||||||||| |||||||||||| ||| | ||| | | |||||||||||||| Sbjct 24698 CCATCTCCCACTTATACTACACCTCTCATGTCTCCTTACAGTGCCAGACTAGAGTCAAGC 24757 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| Sbjct 24758 TCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCG 24817 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24818 CTAGAAAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 24877 Query 413 GATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 24878 GATGACGAGGCATTTGGCTA 24897 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 24414 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 24473 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 24474 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 24533 >seq10555 Length=15048 Score = 304 bits (336), Expect = 4e-80 Identities = 224/260 (86%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 ||||| | | || ||||||| ||||||| | ||||||||||||||| ||| | Sbjct 7137 TCCGCCTAACCGAGTAAGTAAGGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTG 7196 Query 234 CGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | ||||||||||| |||||||||||| ||| | ||| | | |||||||||||||| Sbjct 7197 CCATCTCCCACTTATGCTACACCTCTCATGTCTCCTTACAGTGCCAGACTAGAGTCAAGC 7256 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| Sbjct 7257 TCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCG 7316 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7317 CTAGAAAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 7376 Query 413 GATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 7377 GATGACGAGGCATTTGGCTA 7396 Score = 172 bits (190), Expect = 2e-40 Identities = 98/100 (98%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 11431 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTT 11490 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| Sbjct 11491 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 11530 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 6913 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 6972 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 6973 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 7032 >seq9788 Length=50654 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 16108 CCTTAAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTGCTTGAATTTCTTCACGT 16049 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||| Sbjct 16048 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 16008 Score = 134 bits (148), Expect = 5e-29 Identities = 74/74 (100%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23361 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 23302 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 23301 GAGGCATTTGGCTA 23288 >seq15313 Length=84324 Score = 136 bits (150), Expect = 1e-29 Identities = 75/75 (100%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70158 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 70217 Query 419 GAGGCATTTGGCTAC 433 ||||||||||||||| Sbjct 70218 GAGGCATTTGGCTAC 70232 Score = 109 bits (120), Expect = 2e-21 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| | |||||||||||||||||| Sbjct 74415 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCTTTAGGACACCTGCGTTATT 74356 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| |||| |||| |||||||||| |||| || |||| || | |||||| Sbjct 74355 CTTTGACAGATGTACCGCTCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 74296 >seq10510 Length=29112 Score = 120 bits (132), Expect = 1e-24 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 6186 AGTAGATAGGGACAGTGGGAATTTCGTTAATCCATTCATGCGCGTCATTAATTAGATGAC 6127 Query 419 GAGGCATTTGGCTA 432 |||| ||||||||| Sbjct 6126 GAGGTATTTGGCTA 6113 >seq10882 Length=1520502 Score = 113 bits (124), Expect = 1e-22 Identities = 151/211 (72%), Gaps = 18/211 (9%) Strand=Plus/Minus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCACTTAT 247 ||||||| ||| || | ||||||||||||||| || | | | ||||||||||| Sbjct 1488208 AAGTAAAGAAATAATGAACGTAGTGGTATTTCACCGACGATGTCGCTGTCTCCCACTTAT 1488149 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG---TCAAGC------------ 292 ||||| ||||| ||| || | || ||| ||||| | |||||| Sbjct 1488148 GCTACAGTTCTCATGTCTATTTATAATGTCAGACTAAAAAAATCAAGCATTGAATCAGAC 1488089 Query 293 --TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||| ||| ||||| ||||| ||| | |||||| ||| |||||| ||||||| Sbjct 1488088 TATCAACAGGATCTCCTTTCTCCGCTAATTTTTCTAAGCCCATTCTCTTGGCAGTGGTTT 1488029 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATC 381 ||||||||| ||||| |||||||| ||||| Sbjct 1488028 CGCTAGATAATAGATTGGGACAGTAAGAATC 1487998 >seq10123 Length=19071 Score = 105 bits (116), Expect = 2e-20 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 63 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGAC 4 Query 497 ATT 499 ||| Sbjct 3 ATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634948522592