Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9788 437 3e-120 >seq9788 Length=50654 Score = 437 bits (484), Expect = 3e-120 Identities = 424/540 (79%), Gaps = 40/540 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 10335 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 10276 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10275 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 10216 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 10215 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 10156 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 10155 AGGCGCAGAGCCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 10096 Query 240 TCAAGG-CCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGA 289 | ||| || |||||| | |||||||| || ||||||| || | | || Sbjct 10095 GCTAGGACCGTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAATAAACGGTGGACGGA 10036 Query 290 AGG-------------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGT 332 || || | | |||| |||||||||| | ||||||| || Sbjct 10035 CGGAATCCGCCCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCATCACTGGT 9976 Query 333 CGGG---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAA 386 |||| | ||| |||||||||||||||||||||||||| |||||||| ||| || Sbjct 9975 CGGGACTCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-G 9917 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 ||||| ||| ||| ||| ||||||||||||||||||||||||| ||||||| || || Sbjct 9916 GGTACAATCTAATGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA---AT 9860 Query 447 T--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9859 TCGGCATGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 9800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510167715584