Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq9873 109 4e-19
seq10371 86.0 5e-12
>seq9873
Length=3435365
Score = 109 bits (120), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494
||||| ||||||| || || ||||||| | | ||||||||| |||||| |
Sbjct 2562956 AAAGCTAATTGGGCATTAAACTGGATCAATCATGAGAGTGCTACATTTCCTGAACGTGTA 2563015
Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554
| || ||||||| ||||| ||| | || ||||| || ||||| || || ||||||
Sbjct 2563016 GTCGCGTTTGCGGCTGTCGAAGGTATTTTCTTCAGCGGTAGTTTTGCAGCTATATTTTGG 2563075
Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
|||| ||||| ||| ||||||| ||||| |||||||||||||| | |||| |||||
Sbjct 2563076 CTGAAAAAACGAGGAATTATGCCAGGTCTCACCTTCAGCAATGAACT--TATCTCGCGA 2563132
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
||||| || || ||||||||||| || || ||||| || ||||||||| | | || |
Sbjct 2562164 CATGTCTTAGCATTCTTTGCCGCATCCGATGGTATTGTTAATGAGAATCTGATTGAGAGA 2562223
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| || ||||| || | | || || |||||||| || ||||| || ||||| ||
Sbjct 2562224 TTCAGTCAAGAGGTAAAAATTACCGAAGCACGTTGTTTTTATGGCTTTCAAATTGCAATA 2562283
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|| || |||| || |||||||| | | ||||| || ||||| ||
Sbjct 2562284 GAAAACATCCATTCTGAGATGTATTCTTTGCTCATTGAAACGTATAT 2562330
>seq10371
Length=124667
Score = 86.0 bits (94), Expect = 5e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072
|||||| | || || ||||| | || ||||| ||| || || ||||||||||||||
Sbjct 63304 AGATGCTAAATTACACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCA 63363
Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132
|| || ||||| || ||||| | || ||| ||||| || |||||||| |||
Sbjct 63364 CAAGTTGCTGCATTTGATAGTGCCTATATGCTGATGATTCGATTTTCGATTGCAATGATC 63423
Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192
|| || | ||| || || || ||||| || ||||| ||| | |||||| |||| |
Sbjct 63424 TTTATAAAGCATATAAGGTGTTCCGGTTTCTACTTGAGACCTGAGAATGGCGAGCCATAC 63483
Query 66193 AGCGCGTGCCTTCAC 66207
|| | |||| |||
Sbjct 63484 AGACCTGGCCTCCAC 63498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397493483208560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |