Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9873 109 4e-19 seq10371 86.0 5e-12 >seq9873 Length=3435365 Score = 109 bits (120), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 ||||| ||||||| || || ||||||| | | ||||||||| |||||| | Sbjct 2562956 AAAGCTAATTGGGCATTAAACTGGATCAATCATGAGAGTGCTACATTTCCTGAACGTGTA 2563015 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||||| ||||| ||| | || ||||| || ||||| || || |||||| Sbjct 2563016 GTCGCGTTTGCGGCTGTCGAAGGTATTTTCTTCAGCGGTAGTTTTGCAGCTATATTTTGG 2563075 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 |||| ||||| ||| ||||||| ||||| |||||||||||||| | |||| ||||| Sbjct 2563076 CTGAAAAAACGAGGAATTATGCCAGGTCTCACCTTCAGCAATGAACT--TATCTCGCGA 2563132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| || || ||||||||||| || || ||||| || ||||||||| | | || | Sbjct 2562164 CATGTCTTAGCATTCTTTGCCGCATCCGATGGTATTGTTAATGAGAATCTGATTGAGAGA 2562223 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || ||||| || | | || || |||||||| || ||||| || ||||| || Sbjct 2562224 TTCAGTCAAGAGGTAAAAATTACCGAAGCACGTTGTTTTTATGGCTTTCAAATTGCAATA 2562283 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || || |||| || |||||||| | | ||||| || ||||| || Sbjct 2562284 GAAAACATCCATTCTGAGATGTATTCTTTGCTCATTGAAACGTATAT 2562330 >seq10371 Length=124667 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 |||||| | || || ||||| | || ||||| ||| || || |||||||||||||| Sbjct 63304 AGATGCTAAATTACACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCA 63363 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || || ||||| || ||||| | || ||| ||||| || |||||||| ||| Sbjct 63364 CAAGTTGCTGCATTTGATAGTGCCTATATGCTGATGATTCGATTTTCGATTGCAATGATC 63423 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 || || | ||| || || || ||||| || ||||| ||| | |||||| |||| | Sbjct 63424 TTTATAAAGCATATAAGGTGTTCCGGTTTCTACTTGAGACCTGAGAATGGCGAGCCATAC 63483 Query 66193 AGCGCGTGCCTTCAC 66207 || | |||| ||| Sbjct 63484 AGACCTGGCCTCCAC 63498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397493483208560