Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_031108.1
Length=39640
Score E
Sequences producing significant alignments: (Bits) Value
seq6496 167 6e-37
seq13872 122 2e-23
seq11271 118 3e-22
seq6549 96.9 9e-16
seq14809 86.0 2e-12
>seq6496
Length=324
Score = 167 bits (184), Expect = 6e-37
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 9318 GTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCCAGGCGCACGACGTGGAAGG 9377
|||| || ||||| ||||| ||| | ||||| |||||||||| ||| ||||||||
Sbjct 6 GTTGCACGCGGCGGCGGCAGTCGTCCATAGCGTCGCCGGCCAGGCACACTGCGTGGAAG- 64
Query 9378 GATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACCCGGTGA 9437
|||||| |||| ||| ||||| |||| ||||| | | ||||| ||||| |||||||
Sbjct 65 -ATCCATGACCGCGACGGCGTCGGGGAGTTCCTCGGTCGTTGCGGTTTTGAAGCCGGTGA 123
Query 9438 AGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGGCGAGCC 9497
|||| ||||| ||||| ||||| || ||| || |||| | |||||||||||||
Sbjct 124 AGCCATCCATAGCGACGACCTCCACGCTGTCGCGCCAGGCCTGCGGACGGTCGGCGAGCC 183
Query 9498 AGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCA 9533
|||||||||||||| || || |||||||||||||
Sbjct 184 AGGTCTTGAACGCCTGTTTGGATCGGCCCTCGACCA 219
Score = 86.0 bits (94), Expect = 2e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 10135 GGTAGCGTCGGACACGTCGAGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGG 10194
||||||||| | || ||||||||||||||| |||| |||||||||||||| ||| |||
Sbjct 224 GGTAGCGTCAGGCATGTCGAGGTCTTTCGGCTGGAAGGCGTAGGAACCTCTATCCTCGAA 283
Query 10195 AGACCTCGAC 10204
||||||||||
Sbjct 284 AGACCTCGAC 293
>seq13872
Length=940
Score = 122 bits (134), Expect = 2e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 9380 TCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACCCGGTGAAG 9439
|||||||| ||||| | || || | ||| ||| | |||| ||||||||| ||||||||
Sbjct 216 TCCATCACGGTGACGACCTCGGGCAGCTCTTCTACGGCGGTGGTCTTGAAGCCGGTGAAC 157
Query 9440 CCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGGCGAGCCAG 9499
|| ||||||||||| ||||| || | ||||| ||| | || || || |||||||||
Sbjct 156 CCATCCATCGCGACTACCTCCACGCCATCACGCCAGGATTGCTCACGCTCAGCGAGCCAG 97
Query 9500 GTCTTGAACGCCGCCTTCGACCGGCCCTCGACCAT 9534
|||||||||||| || || ||||| | ||||||
Sbjct 96 GTCTTGAACGCCTGTTTGGAGCGGCCTTGGACCAT 62
>seq11271
Length=3259
Score = 118 bits (130), Expect = 3e-22
Identities = 95/114 (83%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 9684 TCAGCAGCCGCTTGCCTTC--AGCCAGGACCGCGTTGTTGGCGGTGTCCCACGCGACCCC 9741
|||| | ||||||||| || |||||||||||||||||| ||||| ||||||||||||||
Sbjct 3196 TCAGGACCCGCTTGCCCTCTCAGCCAGGACCGCGTTGTTCGCGGTATCCCACGCGACCCC 3137
Query 9742 GAGTCCCTCGGCGACACGGGCGACGGTGAGGTGTGCGACCACGATCCCTTCCAG 9795
||||||||| || || || |||||||| | ||| ||||||||||| ||||
Sbjct 3136 GAGTCCCTCTGCCACGCGCGCGACGGTCACGTGCTGAACCACGATCCCGACCAG 3083
Score = 86.0 bits (94), Expect = 2e-12
Identities = 119/164 (73%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 9992 CGTCGGCACCACTGATCTGGTTCCACCACGCGGCACGCGAGGACCGCACGATCCGGTTCA 10051
|||||||||||| | || ||||| | || || || | | ||||| || ||||| ||
Sbjct 2905 CGTCGGCACCACAGGTCCGGTTCGAGGACCCGACAGGTCAACACCGCCCGTTCCGGGTCG 2846
Query 10052 AGTCGTTGTCCGGTCACGCTCAGACCGAGGCCGTCGAGTCGAGC-GAAGGCGGTCAGGTC 10110
|| || || ||||| || | || || || | || ||| ||| |||| ||||||||||
Sbjct 2845 AGCCGCTGGCCGGTAACCCCCAACCCAAGATCATCACGTC-AGCAGAAGACGGTCAGGTC 2787
Query 10111 AGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCGA 10154
||| | | | || || ||| || ||||||||| | ||||||||
Sbjct 2786 AGGACAGGCAAATCCCGCCCGCACGGTAGCGTCAGGCACGTCGA 2743
>seq6549
Length=327
Score = 96.9 bits (106), Expect = 9e-16
Identities = 157/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 9849 TGGTGTCTTGGCGCCACACGTGTCCGCAGTCGGCACAGCGGTAGCGGCGCACTACA---A 9905
||||||||| |||||||||||| |||||| ||| || || || | | | || |
Sbjct 103 TGGTGTCTTAGCGCCACACGTGCCCGCAGCCGGTGCACT--TA-CGCCACCCGACCGTCA 159
Query 9906 CTTCCAGCACGGTCGGTCGCCAGCCCAGCGGCTCGTGGGCCAACCGCCGGATCACGGTGT 9965
| || | |||||| ||||| |||||||||||||| |||| | ||| |||| | ||
Sbjct 160 CGATCAACGTGGTCGGCCGCCACCCCAGCGGCTCGTGCGCCAGCTCGCGGGTCACCGAGT 219
Query 9966 CACGAGCAGCGCCTTCGCTGCCGCACCGTCGGCACCACTGATCTGGTTCCACCACGCGGC 10025
| || | | || ||| ||||| |||||||||||| | || ||||| | || || |
Sbjct 220 CCCGCGGCACACCCTCGGCCCCGCAGCGTCGGCACCACAGGTCCGGTTCGAGGACCCGAC 279
Query 10026 ACGCGAGGACCGCACGATCCGGTTCAAGTCGTTGTCCGGTCAC 10068
| | | ||||| || ||||| || || || || ||||| ||
Sbjct 280 AGGTCAACACCGCCCGTTCCGGGTCGAGCCGCTGGCCGGTAAC 322
>seq14809
Length=2368
Score = 86.0 bits (94), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 16/217 (7%)
Strand=Plus/Plus
Query 9496 CCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCA-GCCTTGCTGGGC 9554
||||||||||||||| |||| |||| |||||| |||| |||| || || |
Sbjct 139 CCAGGTCTTGAACGCAGCCT-----------TCGAGCATGTCTAGCAGGCCTCGCGGGCC 187
Query 9555 CGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCA-CGC 9613
||| |||||| |||| || |||||||||| | || ||| || || || |||
Sbjct 188 CGGTCTTCTCGCGGGCCGGTGTCAGGTCGATGAGGCCAGTCACGCACCGAACGACAGCGC 247
Query 9614 CTGGTGTGGCGCCAGACGTGCTCATCGACGCCAATGACCTTCACGCCCTCAAACCGCGTG 9673
|| || |||| ||| | ||| ||||| || || || |||| | ||||||||||
Sbjct 248 CT--CGTAGCGCACGACATACTCGTCGACCCCGATCACGCTCACCCAATCAAACCGCGCC 305
Query 9674 GGGTCGTTGATCAGCAGCCGCTTGCCTTCAGCCAGGA 9710
|| |||| |||| | | |||||| || || || ||||
Sbjct 306 GGATCGTCGATCGGGAACCGCTTACC-TCGGCGAGGA 341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126703256511996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |