Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq6496 167 6e-37 seq13872 122 2e-23 seq11271 118 3e-22 seq6549 96.9 9e-16 seq14809 86.0 2e-12 >seq6496 Length=324 Score = 167 bits (184), Expect = 6e-37 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 9318 GTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCCAGGCGCACGACGTGGAAGG 9377 |||| || ||||| ||||| ||| | ||||| |||||||||| ||| |||||||| Sbjct 6 GTTGCACGCGGCGGCGGCAGTCGTCCATAGCGTCGCCGGCCAGGCACACTGCGTGGAAG- 64 Query 9378 GATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACCCGGTGA 9437 |||||| |||| ||| ||||| |||| ||||| | | ||||| ||||| ||||||| Sbjct 65 -ATCCATGACCGCGACGGCGTCGGGGAGTTCCTCGGTCGTTGCGGTTTTGAAGCCGGTGA 123 Query 9438 AGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGGCGAGCC 9497 |||| ||||| ||||| ||||| || ||| || |||| | ||||||||||||| Sbjct 124 AGCCATCCATAGCGACGACCTCCACGCTGTCGCGCCAGGCCTGCGGACGGTCGGCGAGCC 183 Query 9498 AGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCA 9533 |||||||||||||| || || ||||||||||||| Sbjct 184 AGGTCTTGAACGCCTGTTTGGATCGGCCCTCGACCA 219 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 10135 GGTAGCGTCGGACACGTCGAGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGG 10194 ||||||||| | || ||||||||||||||| |||| |||||||||||||| ||| ||| Sbjct 224 GGTAGCGTCAGGCATGTCGAGGTCTTTCGGCTGGAAGGCGTAGGAACCTCTATCCTCGAA 283 Query 10195 AGACCTCGAC 10204 |||||||||| Sbjct 284 AGACCTCGAC 293 >seq13872 Length=940 Score = 122 bits (134), Expect = 2e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9380 TCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACCCGGTGAAG 9439 |||||||| ||||| | || || | ||| ||| | |||| ||||||||| |||||||| Sbjct 216 TCCATCACGGTGACGACCTCGGGCAGCTCTTCTACGGCGGTGGTCTTGAAGCCGGTGAAC 157 Query 9440 CCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGGCGAGCCAG 9499 || ||||||||||| ||||| || | ||||| ||| | || || || ||||||||| Sbjct 156 CCATCCATCGCGACTACCTCCACGCCATCACGCCAGGATTGCTCACGCTCAGCGAGCCAG 97 Query 9500 GTCTTGAACGCCGCCTTCGACCGGCCCTCGACCAT 9534 |||||||||||| || || ||||| | |||||| Sbjct 96 GTCTTGAACGCCTGTTTGGAGCGGCCTTGGACCAT 62 >seq11271 Length=3259 Score = 118 bits (130), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 9684 TCAGCAGCCGCTTGCCTTC--AGCCAGGACCGCGTTGTTGGCGGTGTCCCACGCGACCCC 9741 |||| | ||||||||| || |||||||||||||||||| ||||| |||||||||||||| Sbjct 3196 TCAGGACCCGCTTGCCCTCTCAGCCAGGACCGCGTTGTTCGCGGTATCCCACGCGACCCC 3137 Query 9742 GAGTCCCTCGGCGACACGGGCGACGGTGAGGTGTGCGACCACGATCCCTTCCAG 9795 ||||||||| || || || |||||||| | ||| ||||||||||| |||| Sbjct 3136 GAGTCCCTCTGCCACGCGCGCGACGGTCACGTGCTGAACCACGATCCCGACCAG 3083 Score = 86.0 bits (94), Expect = 2e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 9992 CGTCGGCACCACTGATCTGGTTCCACCACGCGGCACGCGAGGACCGCACGATCCGGTTCA 10051 |||||||||||| | || ||||| | || || || | | ||||| || ||||| || Sbjct 2905 CGTCGGCACCACAGGTCCGGTTCGAGGACCCGACAGGTCAACACCGCCCGTTCCGGGTCG 2846 Query 10052 AGTCGTTGTCCGGTCACGCTCAGACCGAGGCCGTCGAGTCGAGC-GAAGGCGGTCAGGTC 10110 || || || ||||| || | || || || | || ||| ||| |||| |||||||||| Sbjct 2845 AGCCGCTGGCCGGTAACCCCCAACCCAAGATCATCACGTC-AGCAGAAGACGGTCAGGTC 2787 Query 10111 AGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCGA 10154 ||| | | | || || ||| || ||||||||| | |||||||| Sbjct 2786 AGGACAGGCAAATCCCGCCCGCACGGTAGCGTCAGGCACGTCGA 2743 >seq6549 Length=327 Score = 96.9 bits (106), Expect = 9e-16 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 9849 TGGTGTCTTGGCGCCACACGTGTCCGCAGTCGGCACAGCGGTAGCGGCGCACTACA---A 9905 ||||||||| |||||||||||| |||||| ||| || || || | | | || | Sbjct 103 TGGTGTCTTAGCGCCACACGTGCCCGCAGCCGGTGCACT--TA-CGCCACCCGACCGTCA 159 Query 9906 CTTCCAGCACGGTCGGTCGCCAGCCCAGCGGCTCGTGGGCCAACCGCCGGATCACGGTGT 9965 | || | |||||| ||||| |||||||||||||| |||| | ||| |||| | || Sbjct 160 CGATCAACGTGGTCGGCCGCCACCCCAGCGGCTCGTGCGCCAGCTCGCGGGTCACCGAGT 219 Query 9966 CACGAGCAGCGCCTTCGCTGCCGCACCGTCGGCACCACTGATCTGGTTCCACCACGCGGC 10025 | || | | || ||| ||||| |||||||||||| | || ||||| | || || | Sbjct 220 CCCGCGGCACACCCTCGGCCCCGCAGCGTCGGCACCACAGGTCCGGTTCGAGGACCCGAC 279 Query 10026 ACGCGAGGACCGCACGATCCGGTTCAAGTCGTTGTCCGGTCAC 10068 | | | ||||| || ||||| || || || || ||||| || Sbjct 280 AGGTCAACACCGCCCGTTCCGGGTCGAGCCGCTGGCCGGTAAC 322 >seq14809 Length=2368 Score = 86.0 bits (94), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 16/217 (7%) Strand=Plus/Plus Query 9496 CCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCA-GCCTTGCTGGGC 9554 ||||||||||||||| |||| |||| |||||| |||| |||| || || | Sbjct 139 CCAGGTCTTGAACGCAGCCT-----------TCGAGCATGTCTAGCAGGCCTCGCGGGCC 187 Query 9555 CGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCA-CGC 9613 ||| |||||| |||| || |||||||||| | || ||| || || || ||| Sbjct 188 CGGTCTTCTCGCGGGCCGGTGTCAGGTCGATGAGGCCAGTCACGCACCGAACGACAGCGC 247 Query 9614 CTGGTGTGGCGCCAGACGTGCTCATCGACGCCAATGACCTTCACGCCCTCAAACCGCGTG 9673 || || |||| ||| | ||| ||||| || || || |||| | |||||||||| Sbjct 248 CT--CGTAGCGCACGACATACTCGTCGACCCCGATCACGCTCACCCAATCAAACCGCGCC 305 Query 9674 GGGTCGTTGATCAGCAGCCGCTTGCCTTCAGCCAGGA 9710 || |||| |||| | | |||||| || || || |||| Sbjct 306 GGATCGTCGATCGGGAACCGCTTACC-TCGGCGAGGA 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126703256511996