Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_033316.1 Length=1652 Score E Sequences producing significant alignments: (Bits) Value seq9780 95.1 1e-16 >seq9780 Length=231597 Score = 95.1 bits (104), Expect = 1e-16 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 457 TAAATCGAACCCTCTGTCGTGAGGAATTCGTATATTATTGTATTCTTTTACTTTGGTTTA 516 || |||||| |||| ||| |||||| || |||||| | | | ||| | ||| ||| Sbjct 125755 TAGATCGAATCCTCGCTCGCGAGGAACTCTCATATTAAGGGACCGTATTAATGTGGATTA 125814 Query 517 GAATGCTTGAGATAAAGGCTAAACAAAGAGGTGTTGTATTAATAT-CTCAGGAAAAGGAC 575 || |||| || || || || |||||| | | || |||| | | ||| ||||| | Sbjct 125815 GACTGCTGGACATCAAAGCGAAACAAGGTGACACTGCGTTAACAAGCGCAGAAAAAG-AT 125873 Query 576 ATTCGAAAAGCAGTTGCAGACTTGACATTT--AATGTTCCGCAACCTATCCAAACGTATC 633 ||||| ||||| ||||||||| ||| ||| || || || | ||| | ||| ||||| Sbjct 125874 ATTCGCAAAGCGGTTGCAGAC--GACGTTTTCAACGTCCCACTGCCTCTGCAAGCGTATA 125931 Query 634 TCAGTCAGATTGGAA-ATGTGACAGATAAAATGGGAAAGGAAA 675 ||| |||||||| || || |||||| ||||||||||||| Sbjct 125932 TCAACGAGATTGGACCATACGA-AGATAAGATGGGAAAGGAAA 125973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5176753970452