Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_033852.1 Length=1766 Score E Sequences producing significant alignments: (Bits) Value seq13321 174 2e-40 >seq13321 Length=3386461 Score = 174 bits (192), Expect = 2e-40 Identities = 338/492 (69%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 414 AAAGATGAACCACTTTATAACATAGTAAATGGTTCAAGGCCTAACAAAAGATTGTATTCT 473 ||| |||||||||| ||| | ||||| ||| ||||| || | |||||| ||||| Sbjct 561956 AAAAATGAACCACTATATGATCTAGTAGCTGGATCAAGACCAGTGAGAAGATTATATTCC 562015 Query 474 GTAAATTTTGATTTTTCGTCCTTTCCCCTGTTGTGTGATATG--ACATACCGCGAGTTAA 531 ||||| ||| |||||| ||||| || |||||||| | ||||| | || |||| Sbjct 562016 CAAAATTGTGACTTTTCGGGTTTTCCACTTTTGTGTGAGACAGTACATA--GAGACTTAA 562073 Query 532 GATTATCCAATCCACGGATTAAAAGAGAAATGCCATTCTGCAGCTTTCTCCATTCAATGA 591 | || |||||| | ||||| | ||| | |||| ||| ||| | || ||||||| Sbjct 562074 AACAGTCAAATCCAAGAATTAAGCGCGAATTACCATATTGCGCTTTTTTACACTCAATGA 562133 Query 592 CCAGCTGTTTGAATGCGTGGATAATCCAGACCGTGAAGAAAATAAACAGCGAAGATAGGT 651 | | ||| | ||||| ||| |||| | | ||||| || | || |||||||| | Sbjct 562134 CGACATGTCTAAATGCCTGGTTAATTAACAACGTGACTAAGGTTAATTTAGAAGATAGAT 562193 Query 652 TTAGTGAAGAAAGAGATCCCGCTGAACTAATACCGCTTGAGATGTTAATACCTCAACCCA 711 ||| || ||| ||| | | ||||||| |||||||||||| |||||||| | Sbjct 562194 ATAGCGATGAATCGGATTCACTATCATTAATACCAAATGAGATGTTAATCCCTCAACCAA 562253 Query 712 TTGCAGAATACCTATCCCTGGTTAATACAATCGTCACTTCGTCAGGTGATACAGTGAGAG 771 | || |||||| | ||| || | |||||| | | || | || || ||||| | |||| Sbjct 562254 TAGCTGAATACTTGTCCATGATCAATACAGTAATAACACCTTCTGGAGATACTATTAGAG 562313 Query 772 TTAACTTTCCTGATGCTGGATTACCGCAATTATCAT-TACCGGAAGATGGCGATAAACCA 830 ||||| |||| ||| | | | || ||| || || |||| | ||| | | ||| Sbjct 562314 TTAACGTTCCAGATTCATGCGTGCCTCAA-CATAATATACCAGCAGAAGAAGGAAAAGAG 562372 Query 831 GAAGTTCCTCCAGGTAGTTTTGGAGATG-TAACGTCCCAGAATCATAATGCCTACGAGTG 889 | | || ||||| |||||||| |||| | ||| | |||||||||||| | || || || Sbjct 562373 GCTATACCACCAGGAAGTTTTGGTGATGCTGACG-CACAGAATCATAATACTTATGAATG 562431 Query 890 CTACGTGTCTCC 901 || || ||||| Sbjct 562432 TTATGTTTCTCC 562443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5541494361448