Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq843 206 5e-51 seq249 199 8e-49 seq20 132 9e-29 >seq843 Length=2902 Score = 206 bits (228), Expect = 5e-51 Identities = 252/336 (75%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA- 62 ||||| ||||| |||||||||||| |||| ||| | | ||||| | | ||||||| | Sbjct 1270 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGACACTTACAAACAGACGGAGCCCAA 1212 Query 63 GTGA--TTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | ||| ||||||| ||| ||||||| || ||| ||| ||| ||| | | || | Sbjct 1211 GATACGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGA 1153 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || ||||| | |||| || || || ||||||||| || || |||||| | Sbjct 1152 GCAAGCTTAAGCCGAT-AGGCG---TATGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCA 1097 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| || | ||||| |||||||| |||||||| ||| ||||||||||||| | ||| Sbjct 1096 AGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGGGGT 1037 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | ||||||||||||| ||| |||||||| || ||||||| | || || Sbjct 1036 AACACCCACTGGAGGACCGAACGGGTGCCTGTTGAAAAAGGCTCCGATGACTTGTGGTTA 977 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||||||||||||| || Sbjct 976 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGT 941 >seq249 Length=9465 Score = 199 bits (220), Expect = 8e-49 Identities = 248/337 (74%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| |||||||| | || |||||| | Sbjct 6123 CCCGACGAGGGGAGTGAAACAGTACCTGAAACCGGATGCCTACAAACAGTTGGAGCCCAA 6064 Query 64 TGAT-----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | |||||| |||| ||||||| |||||| | | ||| ||||| || | | Sbjct 6063 GGTTCGTCCTGGGTGACAGCGTACCTTTTGTATAATGGGTCAGCGACTTAGT-GTATCGA 6005 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 || || ||||| | || || ||| || || ||||||||| || ||||||||| Sbjct 6004 GCAAGCTTAAG-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTT 5950 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| | || ||||| ||||||| |||||||| ||| ||||||||||||| ||| Sbjct 5949 CAGTTCGATGCATTAGACCCGAAACCAAGTGATCTAGCCATGAGCAGGTTGAAGGTACGG 5890 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| ||| |||||||||||||| || |||| || | |||||||| | || | Sbjct 5889 TAACACGTACTGGAGGACCGAACCCATATCTGTTGCAATAGATCGGGATGACTTGTGGCT 5830 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||| ||| |||||| || Sbjct 5829 AGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGT 5793 >seq20 Length=12842 Score = 132 bits (146), Expect = 9e-29 Identities = 190/265 (72%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| |||||||||||||| | | ||||||| || | ||| || ||||| Sbjct 10021 GTGACAGCGTACCTTTTGCATAATGGGTCAGCGAGTTAATC-TATGAAGCAAGCTTAAG- 10078 Query 131 GCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | || || ||| || || |||||| || || || |||||| |||| | Sbjct 10079 ----CCGGTAGGTGTAGGCGTAGCGAAAGCAAGTCTGAATAGGGCGTTTAGTTTTATGGA 10134 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| || || ||| |||||| ||||| | | || Sbjct 10135 TTAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTATGGTAAAACATACTG 10194 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||| || || |||| || || | |||||| | | | ||||||||||||| Sbjct 10195 AAGGATCGAACCAGTTAATGTTGCAACATTATTGGATGAGTTGTGATTAGGGGTGAAAGG 10254 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||| |||||||||| || Sbjct 10255 CCAATCAAACTTGGAAATAGCTGGT 10279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972785417728