Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq249 176 6e-42 seq20 154 2e-35 seq843 141 1e-31 >seq249 Length=9465 Score = 176 bits (194), Expect = 6e-42 Identities = 190/251 (76%), Gaps = 17/251 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 4868 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 4926 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACC-AGCT- 118 | ||||||||||| ||||||||||||| ||| || ||| ||| ||| ||||| || | Sbjct 4927 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCCCACCTAGTTG 4986 Query 119 -CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | | | | | ||| | ||||| ||||||||||| | ||||||||| Sbjct 4987 CCTAAATGGAGGTCA-------------CGCTTCTTCCGAAGTTACGCGTGCATTTTGCC 5033 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| | | |||||| | | | |||||| |||||||||||| | ||||| ||||| Sbjct 5034 GAGTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCAGTGTC 5093 Query 238 GGTTTACGGTA 248 |||||| |||| Sbjct 5094 GGTTTAGGGTA 5104 >seq20 Length=12842 Score = 154 bits (170), Expect = 2e-35 Identities = 185/247 (75%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| || ||||| ||| || ||| Sbjct 11218 TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTA-CGTGTTTGCAGA 11160 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||||||||||||||||| | | ||||| | || ||||| |||| Sbjct 11159 GTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTG------CCACCTACTCA- 11107 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | | |||| || ||||||| |||||||||| || | |||||||| | Sbjct 11106 -TAGTTGCCTAAAAGCA--GGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCCGAGT 11050 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||| | ||| ||||||||| |||||| | ||||| ||||||||| Sbjct 11049 TCCTTCAACATCATTCTTTC-AACACCTTAGTATACTCTACTTATCCACCAGTGTCGGTT 10991 Query 242 TACGGTA 248 ||||||| Sbjct 10990 TACGGTA 10984 >seq843 Length=2902 Score = 141 bits (156), Expect = 1e-31 Identities = 181/248 (73%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 11 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 69 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| |||| || ||| Sbjct 70 AGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACGACGTGCTTG 129 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||| ||| | |||| |||||||||||||| | | ||||||| Sbjct 130 ------CGCACGCCA----TGGGCCTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAG 179 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 180 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 239 Query 241 TTACGGTA 248 || |||| Sbjct 240 TTCGGGTA 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694389916227