Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq249 324 3e-86 seq20 300 4e-79 seq843 143 7e-32 >seq249 Length=9465 Score = 324 bits (358), Expect = 3e-86 Identities = 320/411 (78%), Gaps = 31/411 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 4696 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 4755 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4756 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4815 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | |||||||||||||||||| |||||||| || | |||| || | | | || Sbjct 4816 TAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAATGCTT-------GCACATCTCCTC 4868 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 4869 --TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAG 4926 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| | |||||| | | | ||| Sbjct 4927 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACC------------ 4974 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCG--CAC-CTTCTCCCGAAGTTACG-GTGCCTTT 368 | | | ||| ||| | || | ||| ||||| ||||||||||| ||| | || Sbjct 4975 CCCACCTAGT-----TGCCTAAATGGAGGTCACGCTTCTTCCGAAGTTACGCGTG-CATT 5028 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 5029 TTGCCGAGTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 5079 >seq20 Length=12842 Score = 300 bits (332), Expect = 4e-79 Identities = 234/279 (84%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| | |||||| ||| | || ||||||||| |||| | ||||||||| Sbjct 11403 CGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGT 11344 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11343 GGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 11284 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 |||||||||| | ||||||||||||||||||| |||||||| || ||||||| || Sbjct 11283 TTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGCTT-GC---- 11229 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| | ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 11228 ----ACCCCTCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTT 11173 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||||| ||||||||||| ||||||||||| Sbjct 11172 ACGTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 11134 >seq843 Length=2902 Score = 143 bits (158), Expect = 7e-32 Identities = 167/225 (74%), Gaps = 14/225 (6%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||||||||||||||||||||||||||| |||||||||||| ||| || || |||||| Sbjct 12 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCAGAG 71 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| |||||||| || | |||||| | | | || | | |||| || Sbjct 72 CCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACGACGTGCTTGCG 131 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| | || ||| | |||| |||||||||||||| | ||||| Sbjct 132 ------------CACGC-CATGGGC-CTCCTTATCCCGAAGTTACGGAGGTAAATTGCCG 177 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 178 AGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260781100608