Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq249 327 2e-87 seq20 284 3e-74 seq843 113 1e-22 >seq249 Length=9465 Score = 327 bits (362), Expect = 2e-87 Identities = 297/374 (79%), Gaps = 20/374 (5%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||| | ||||||| | || Sbjct 4691 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAG 4750 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4751 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 4810 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||||||||||| | |||| ||| |||| ||| Sbjct 4811 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAATGC-----TTGC----ACA 4861 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 4862 TCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTT 4921 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------- 294 ||||| ||||||||||||||||||||||||| ||| ||| ||| || Sbjct 4922 CGCAGAGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCCCACCT 4981 Query 295 ---TGTC-ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 || | | | ||| | ||||| || |||||||| | ||||||||||||||||| Sbjct 4982 AGTTGCCTAAATGGAGGTCACGCTTCTTCCGAAGTTACGCGTGCATTTTGCCGAGTTCCT 5041 Query 351 TAACAATAGTTCTC 364 | | ||||||| Sbjct 5042 TCAACGCAGTTCTC 5055 >seq20 Length=12842 Score = 284 bits (314), Expect = 3e-74 Identities = 284/367 (77%), Gaps = 21/367 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||| ||| |||| | ||||||| | || || | ||||||||| || Sbjct 11397 TACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGTGGAGAA 11338 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11337 ATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 11278 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| | |||||||||||||||||||||||||| | |||| || |||| || Sbjct 11277 CCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGC-----TTGC----AC 11227 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||| ||||||| || ||| || | Sbjct 11226 CCCTCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTACGTGT 11167 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCA 299 | ||||| ||||||||||| ||||||||||||| |||||| | ||| ||| ||| Sbjct 11166 TTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTGCCACCTACTCA 11107 Query 300 TAG----------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 ||| |||| ||||||| || ||||||| || | ||||||||||||| Sbjct 11106 TAGTTGCCTAAAAGCAGGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCCGAGTTCC 11047 Query 350 TT-AACA 355 || |||| Sbjct 11046 TTCAACA 11040 >seq843 Length=2902 Score = 113 bits (124), Expect = 1e-22 Identities = 141/192 (73%), Gaps = 11/192 (6%) Strand=Plus/Plus Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 ||| ||||||||||| |||||||||||||||||| ||||||| || |||||||| || | Sbjct 7 TCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCG 66 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTCA 299 |||| |||||||||||| |||||||| || ||| ||| ||| || || Sbjct 67 CAGAGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACGACGTGC 126 Query 300 TAG---AC----AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | || || | |||| |||| ||||||||| | | |||||||||||||| Sbjct 127 TTGCGCACGCCATGGGCCTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTCCTTC 186 Query 353 ACAATAGTTCTC 364 | ||||||||| Sbjct 187 AACATAGTTCTC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062384074624