Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1051 279 1e-72 seq693 181 2e-43 seq249 181 2e-43 seq20 154 3e-35 >seq1051 Length=1463 Score = 279 bits (308), Expect = 1e-72 Identities = 254/319 (80%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 21 GAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGA 80 || ||| | |||| |||| || |||| | | ||||||||| |||| || | ||||| | Sbjct 130 GATATGCAGACGCTAGTAGGCATGGAGTCACCATTGGGATACCACCCTTGCTATATTGAA 189 Query 81 TTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGG 140 ||||||| || | || | | | | |||||||||| | ||| ||||||||||| Sbjct 190 ATTCTAACTTGAGATCATA-ATCTGGTCTAAGGACAGTGTCTGGTGGGTAGTTTGACTGG 248 Query 141 GGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAA 200 ||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||||| Sbjct 249 GGCGGTCGCCTCCTAAAAAGTAACGGAGGCGCCCAAAGGTACCCTCAATATGAATGGAAA 308 Query 201 CCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGG 260 ||| | | || ||||||| ||||||||| |||||||||| || |||||| |||||| Sbjct 309 TCATATGTAGAGCGCAAAGGTAAAAGGGTGCTTGACTGCGAGACATACAAGTCGAGCAGG 368 Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320 |||||||| ||||||| |||||||||||||||| ||||| | ||||||||| |||||| Sbjct 369 AACGAAAGTTGGGCTTAGTGATCCGGCGGTGCTGTGTGGAAAGACCGTCGCTCAACGGAT 428 Query 321 AAAAGCTACCCTGGGGATA 339 ||||| ||||| ||||||| Sbjct 429 AAAAGTTACCCCGGGGATA 447 >seq693 Length=350174 Score = 181 bits (200), Expect = 2e-43 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 350080 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 350021 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || | | | || ||||| || ||||| | | || ||| || |||| ||| | Sbjct 350020 CGTGCGACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCATAAGCCT 349961 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| ||| |||||| ||||| |||||||||||| | || |||||||| || Sbjct 349960 GCCTGACTGCGAGACCAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 349901 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | |||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 349900 TCCCGCGTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 349851 >seq249 Length=9465 Score = 181 bits (200), Expect = 2e-43 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 4509 GGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCG 4450 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | | | || ||||| || ||||| | | || ||||||| |||| ||| || Sbjct 4449 CGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTGCAATGGCATAAGCCTGC 4390 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| | || |||||| ||||| |||||||||||| | || |||||||| ||| Sbjct 4389 CTGACTGCAAGACTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTC 4330 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 4329 CCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 4282 >seq20 Length=12842 Score = 154 bits (170), Expect = 3e-35 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| |||||||||||||||||||||||| ||| ||||||||||||| Sbjct 11578 GGACATTGTATGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAAAGTAACGGAGGCG 11637 Query 172 CCCAAAGATACCCT-CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||| || || ||| ||| ||||| || | ||| ||| |||| ||| || Sbjct 11638 TGCGAAGGTAAGCTAGAGC-TGGTCGGAAATCAGCTTGATAGTACAATGGCATAAGCTTG 11696 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| || | |||| | ||||| |||||||||||| | || |||||||| | | Sbjct 11697 CCTGACTGTGAGGCTGACAAGCCAAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGAT 11756 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| || | |||||| ||||||||||| ||| | ||||||| Sbjct 11757 TCTGTATGGAAGGGTCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 11805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982385273824