Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1212 322 1e-85 seq249 282 9e-74 seq966 266 7e-69 seq812 235 1e-59 seq917 212 1e-52 >seq1212 Length=36954 Score = 322 bits (356), Expect = 1e-85 Identities = 274/335 (82%), Gaps = 16/335 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||||| ||| || ||||||| ||||||||||||||||||||| Sbjct 1371 CTTTACAACCCAAAGGCCTTCTT-CACTCATGCGGCAT-GGCTGGATCAGGCTTTCGCCC 1314 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1313 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAG 1254 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||| ||| || |||| | |||||||| || ||||| || Sbjct 1253 TGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCA 1194 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | ||||||||||| ||| |||| || | || Sbjct 1193 CCAACTAGCTAATCTAATATAGGCTCATCTAATA--GCAA-----TAAATT-------TT 1148 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| ||||| ||||||||| |||||||| | |||| || ||||| || Sbjct 1147 TCCCCCGTAGGGCGTATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAG 1088 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||||| ||||||||||||||| ||| || Sbjct 1087 GTAGATTCCTATACATTACTCACCCGTCTGCCACT 1053 >seq249 Length=9465 Score = 282 bits (312), Expect = 9e-74 Identities = 265/336 (79%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 8495 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 8552 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 8553 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 8612 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||| Sbjct 8613 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGAGCCTTTACCTCA 8672 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||| || ||| ||| | || | || ||| Sbjct 8673 CCAACTAGCTAATCCAACGCGGGCCGATCCTTTGCCGATA------AA--------TCTT 8718 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||| ||| | || |||||||||| |||||| ||||| || | | || Sbjct 8719 TCCCCCGAAGGGCACATACGGTATTAGCACAAGTTTCCCTGAGTTATTCCGTAGCAAAAG 8778 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | | |||| | || ||||||||||||| ||||||| Sbjct 8779 GTACGTTCCCACGCGTTACTCACCCGTCTGCCGCTC 8814 >seq966 Length=90452 Score = 266 bits (294), Expect = 7e-69 Identities = 260/334 (78%), Gaps = 16/334 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| ||||||||| | || |||||||||| ||||| ||||||||||||||| Sbjct 88910 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 88853 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| | Sbjct 88852 TTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAAT 88793 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct 88792 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCAC 88733 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| ||| ||| ||||| || |||| Sbjct 88732 CAACTAGCTAATCAGACGCGGGCCGCTCT-------AAAGGCGATAA-------ATCTTT 88687 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| |||||| ||||| || || ||| Sbjct 88686 CCCCCGAAGGGCACATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCTAAAGG 88627 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | | ||||||||||||||||| || Sbjct 88626 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 88593 >seq812 Length=1388629 Score = 235 bits (260), Expect = 1e-59 Identities = 228/292 (78%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 45 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGAC 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGC 60 Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTG 164 ||||||||||| ||| |||| ||||||||||||||||||||| ||| ||||||||||||| Sbjct 61 CGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTG 120 Query 165 GTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCC 224 ||||||| ||||||||||||| |||||||| ||| ||| |||| ||| | Sbjct 121 GTGAGCCGTTACCTCACCAACAAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA---- 176 Query 225 CGAAGGTCCCCTGCTTTCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACG 283 || ||||| ||||| ||| | ||| |||||||||| |||||| | Sbjct 177 --AA--------TCTTTC-CCCGTAAGGGCTTATTCGGTATTAGCACAAGTTTCCCTGTG 225 Query 284 TTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | || || | ||| | |||| | || ||||||||||||| ||| || Sbjct 226 TTGTTCCGAACCAAAAGGTACGTTCCCACGCGTTACTCACCCGTCTGCCACT 277 >seq917 Length=2224 Score = 212 bits (234), Expect = 1e-52 Identities = 166/196 (85%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||| | || |||||||||||| || ||||||||||||||| Sbjct 1895 CTTTACAATCCGAAGACCTTCAT-CAGTCACGCGGCATTG-CTCCATCAGGCTTTCGCCC 1952 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| Sbjct 1953 ATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAA 2012 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||||||||||||| | | |||| ||||| ||||||| ||||||||||| | Sbjct 2013 TGTGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTA 2072 Query 181 CCAACTAGCTAATCCG 196 |||||||| |||| || Sbjct 2073 CCAACTAGTTAATGCG 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071983930720