Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq249 358 2e-96 seq20 356 8e-96 seq843 315 3e-83 seq917 116 1e-23 seq732 82.4 3e-13 >seq249 Length=9465 Score = 358 bits (396), Expect = 2e-96 Identities = 400/526 (76%), Gaps = 20/526 (4%) Strand=Plus/Plus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATC 104 ||| ||||| |||||||||||| || || ||||| ||| | |||| ||| |||| Sbjct 5674 ACTCCCCGGTATTCGGAGTTTGATTAGGATCAGTAAGACGGTGAGTCCCCATAGCCCATT 5733 Query 105 CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAA 164 |||||||||||| ||||| | | | |||||| |||||||| |||||| |||||| Sbjct 5734 CAGTGCTCTACCCCCGGGGGTATTCGCTGGACGCTCTACCTAAATAGATTTCGCGGAGAA 5793 Query 165 CCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTT 224 ||||||||| | ||||||||||||||||||||||||| ||||| |||||||| || Sbjct 5794 CCAGCTATCTCCAAGTTTGATTGGCCTTTCACCCCTAGCCACAAGTCATCCCGATCTATT 5853 Query 225 TCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGA 284 |||| | |||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 5854 GCAACAGATATGGGTTCGGTCCTCCAGTACGTGTTACCGTACCTTCAACCTGCTCATGGC 5913 Query 285 TAGATCACTTCGCTTCGGGTCT--TG-ATCGTGCCACTCATACGCCCTATTCGGACTCGC 341 |||||||||| | ||||||||| || |||| ||| | ||||||| ||| ||||||| Sbjct 5914 TAGATCACTTGGTTTCGGGTCTAATGCATCG---AACTGA-ACGCCCTGTTCAGACTCGC 5969 Query 342 TTTCGCTACGGCTACCCCACACGGGTTAACCT--CGCGACACAACGCAAACTCGCAGGCT 399 ||||||| || |||| || ||| |||| || | ||| ||| | || |||| | | Sbjct 5970 TTTCGCTGCGCCTACACCTACCGGCTTAAGCTTGCTCGATACA---CTAAGTCGCTGACC 6026 Query 400 CATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATT 459 |||| | ||||||| |||| |||||| | || | ||| ||||| || | || Sbjct 6027 CATTATACAAAAGGTACGCTGTCACCCAGGAC------GAACCTTGGGCTCCAACTGTTT 6080 Query 460 GTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCC 518 ||||||| ||||||||||||| ||||||||||| | ||||| |||||||||||||| Sbjct 6081 GTAGGCATCCGGTTTCAGGTACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 6140 Query 519 CTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||||||||||| || |||||||||||| | ||||| |||||||| Sbjct 6141 CTCACGGTACTGGTTCGCTATCGGTCATGCACGAGTACTTAGGCTT 6186 >seq20 Length=12842 Score = 356 bits (394), Expect = 8e-96 Identities = 417/553 (75%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGC 110 || ||||||||||||||| ||||| |||||| | || |||||||| | ||||||||| Sbjct 10391 GGTATTCGGAGTTTGGTTAGATTT-GGTAAGATGATGAATCCCCCTAGTCTATCCAGTGC 10333 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| || || | ||| | ||||| |||||||| |||||| |||||||||||| Sbjct 10332 TCTACCCCCAACAACATACATACAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCT 10273 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||||||||||||||||||||| |||| |||||| | | || |||| Sbjct 10272 ATTTCCAAGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATAATGTTGCAACA 10213 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | | |||||| |||| || || ||||| |||||| ||| |||| |||||| Sbjct 10212 TTAACTGGTTCGATCCTTCAGTATGTTTTACCATACCTTCAATCTGGTCATGACTAGATC 10153 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | ||| | ||||||||||| |||| ||||||||||| Sbjct 10152 ACTTGGTTTCGGGTCTAATCCATAAAACTAA-ACGCCCTATTCAGACTTGCTTTCGCTAC 10094 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 | |||| || ||| |||| || || || | || ||||| | | |||| | |||| Sbjct 10093 GCCTACACCTACCGGCTTAAGCTTGCTTCATAGATTAA-CTCGCTGACCCATTATGCAAA 10035 Query 411 AGGCACGCCGTCAC-CTGG-TACC--TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||| |||| ||||| || || | |||| | | |||||| || | ||||| ||| Sbjct 10034 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 9975 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | || |||||| | |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 9974 CTTGATTTCAGATTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGT 9915 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||||| | ||||||||| ||||||||||||||||| || ||||||| ||| |||| Sbjct 9914 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 9855 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 9854 AAACAGGATTTCA 9842 >seq843 Length=2902 Score = 315 bits (348), Expect = 3e-83 Identities = 403/549 (73%), Gaps = 11/549 (2%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCT 111 || |||||||||||||||| || |||||| || | |||||||| |||||||||||| Sbjct 829 GGTATTCGGAGTTTGGTTGGGTTTGGTAAGACGGTAAGTCCCCCTAGCCCATCCAGTGCT 888 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | || ||| || |||||||| ||||| ||||||||||||| Sbjct 889 CTACCCCCCACGGTATTCATCCGAGGCGATACCTAAATATCTTTCGCGGAGAACCAGCTA 948 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||| |||||| | |||||||| Sbjct 949 TTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGCCTTTTTCAACAG 1008 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 ||||||||||||| ||| |||||| ||||||||||| ||||| ||||||| Sbjct 1009 GCACCCGTTCGGTCCTCCAGTGGGTGTTACCCCACCTTCAACCTGCTCATGGCTAGATCA 1068 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | ||||||||| | ||| ||||||||||| ||||||||||||||||| Sbjct 1069 CTAGGTTTCGGGTCTAATACAACGAACTTG-ACGCCCTATTCAGACTCGCTTTCGCTACG 1127 Query 352 GCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAA 411 ||| || ||| |||| || || || || |||| ||| ||| | ||||| Sbjct 1128 CATACGCCTATCGGCTTAAGCTTGCTCGTTAAATTAAG-TCGCTGGCCCATAATACAAAA 1186 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 || ||| ||||||| | || || ||| |||||| | | ||||| | || Sbjct 1187 GGTACGACGTCACCCAGAACGTAT------CTTGGGCTCCGTCTGTTTGTAAGTGTCCGG 1240 Query 472 TTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 1241 TTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTG 1299 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| | ||||||| |||||||| |||||||||| ||| |||| || Sbjct 1300 GTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 1359 Query 591 GAAATTTCA 599 |||||| Sbjct 1360 AGGATTTCA 1368 >seq917 Length=2224 Score = 116 bits (128), Expect = 1e-23 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT 506 |||||||| ||||| ||| |||||||||| ||||||||||||||| | |||||||| Sbjct 8 GCTCCGACTTGTTGTAAGCATATGGTTTCAGAAACTATTTCACTCCCCTCTCGGGGTACT 67 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||| ||||||||||||||||| || | |||||||| | ||||||||| |||| Sbjct 68 TTTCATCTTTCCCTCACGGTACTGGTTCACTATCGGTAATTGGTTAGTATTTAGCCTTA 126 >seq732 Length=4595 Score = 82.4 bits (90), Expect = 3e-13 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||| |||||||| |||| | | || | | ||||||| |||||||||||||||| Sbjct 2937 GGTTTCACGTACTATTGAACTCTCTCTTCAAAGTT-CTTTTCAACTTTCCCTCACGGTAC 2879 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||||||||||| | | |||||||| |||| Sbjct 2878 TTGTCCGCTATCGGTCTCGTGGTCGTATTTAGCCTTA 2842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817572754176