Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq843 318 1e-84 seq249 302 1e-79 seq20 269 7e-70 seq917 154 4e-35 seq732 75.2 3e-11 >seq843 Length=2902 Score = 318 bits (352), Expect = 1e-84 Identities = 319/399 (80%), Gaps = 15/399 (4%) Strand=Plus/Plus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| || ||||||| ||||| |||||||| Sbjct 997 CTTTTTCAACAGGCACCCGTTCGGTCCTCCAGTGGGT-GTTACCCCACCTT-CAACCTGC 1054 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || ||||||||| | | Sbjct 1055 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGACGCCCTATTCA 1110 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||||||| | | ||||| | |||||||| || | ||| ||||||| Sbjct 1111 GACTCGCTTT-CGCTACGCATACGCCTATCGGCTTAAGCTT-GCTCGTTAAATTAAGTCG 1168 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||| ||||| |||||||||||||| |||||||| || | |||||||| ||| || Sbjct 1169 CTGGCCCATAATACAAAAGGTACGACGTCACCCAGAACGTATCTTGGGCTCCGTCTGTTT 1228 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| | | |||||||||| ||||||||||||||||| |||||| |||||| ||||||| Sbjct 1229 GTAAGTGTCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 1287 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||||||||||||| | || |||| |||| |||||||| |||||||| Sbjct 1288 CTCACGGTACTGGTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 1347 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| | |||||| Sbjct 1348 CCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCG 1386 >seq249 Length=9465 Score = 302 bits (334), Expect = 1e-79 Identities = 326/417 (78%), Gaps = 16/417 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||| | || || |||| | | |||||||||||||||| || ||| Sbjct 5832 CCACAAGTCATCCCGAT--CTATTGCAACAGATATGGGTTCGGTCCTCCAGTACGT-GTT 5888 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| |||||||| ||| || |||||| | ||||| |||||||| | | | | Sbjct 5889 ACCGTACCTT-CAACCTGCTCAT-GGCTAGATCACTTGGTTT-CGGGTCTAATGC--ATC 5943 Query 129 GA-CTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 || || ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 5944 GAACTGAACGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTACACCTACCGGCTTAAGCTT 6002 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 | | | | |||||||||||||||||||||||||||||||| |||||||| || || Sbjct 6003 GCTCGAT-ACACTAAGTCGCTGACCCATTATACAAAAGGTACGCTGTCACCCAGGACGAA 6061 Query 245 G--TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||||||| |||| ||||| |||| |||||||||| || ||||||||||||| || Sbjct 6062 CCTTGGGCTCCAACTGTTTGTAGGCATCCGGTTTCAGGTACTGTTTCACTCCCCTCGTCG 6121 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||| |||||| |||||||||||||||||| |||| |||||||||| || |||| ||| Sbjct 6122 GGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCATGCACGAGTACTTA 6181 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | |||||| ||||| ||||| |||||||| |||| |||| ||| ||||||| Sbjct 6182 GGCTTGGATCGTGGTCGACCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTC 6238 >seq20 Length=12842 Score = 269 bits (298), Expect = 7e-70 Identities = 300/390 (77%), Gaps = 23/390 (6%) Strand=Plus/Minus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||| |||| |||| || ||||| ||||| ||| ||| ||| | |||||| | Sbjct 10206 GGTTCGATCCTTCAGTATGTT-TTACCATACCTT-CAATCTGGTCAT-GACTAGATCACT 10150 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 ||||| |||||||| | | | |||| |||||||| | ||||| ||||| ||||||| Sbjct 10149 TGGTTT-CGGGTCTAATCCATAAA-ACTAAACGCCCTATTCAGACTTGCTTT-CGCTACG 10093 Query 165 CCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAA 223 ||| | |||| | |||||||| || | | | ||| ||||||||||||||| ||||| Sbjct 10092 CCTACACCTACCGGCTTAAGCTT-GCTTCATAGATTAACTCGCTGACCCATTATGCAAAA 10034 Query 224 GGTACGCAGTCACCC--------AACAAAGTGG------GCTCCCACTGCTTGTACGCAT 269 ||||||| ||||| | || ||| || ||||| |||| ||||| ||| Sbjct 10033 GGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCAC 9974 Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 9973 TTGATTTCAGATTCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGT 9915 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389 ||| |||||||||||||| | || ||||||||| ||||||||||||||||||||||||| Sbjct 9914 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 9855 Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||| |||| ||||| ||| |||||| Sbjct 9854 AAACAGGATTTCACGTGCCCCGCTCTACTC 9825 >seq917 Length=2224 Score = 154 bits (170), Expect = 4e-35 Identities = 141/175 (81%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||| ||| ||||| ||||| |||||||| | |||||||||||||||||| ||||| Sbjct 6 GGGCTCCGACTTGTTGTAAGCATATGGTTTCAGAAACTATTTCACTCCCCTCTC-GGGGT 64 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 |||||| ||||||||||||||||| ||||||||||||| | | ||||||||||||| Sbjct 65 ACTTTTCATCTTTCCCTCACGGTACTGGTTCACTATCGGTAATTGGTTAGTATTTAGCCT 124 Query 367 T--GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | | || ||||| | || |||| ||||| ||| | ||||| || | ||||| Sbjct 125 TACGCAG--TGGTCTGCGCAAATTCCGACAAGGTTCCACGTGCCTCGCCGTACTC 177 >seq732 Length=4595 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||| |||| | ||| | ||||||||| |||||||||||||| Sbjct 2939 ACGGTTTCACGTACTATTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 2881 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| || | ||||||||| || |||||||||||| || Sbjct 2880 ACTTGTCCGCTATCGGTCTCGTGGTCGTATTTAGCCTTAGA 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241581388416