Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq1095 179 9e-43 seq1301 113 1e-22 seq998 107 4e-21 >seq1095 Length=1089284 Score = 179 bits (198), Expect = 9e-43 Identities = 190/246 (77%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||| | Sbjct 872701 CGATGGTCAGCAACTCGCCGCCCACGTCGGTCCACGCGAGGCCAGTGACGACACCGACCT 872760 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGG 119 |||| | ||| |||| | |||||||| ||| || ||||||||||||||| ||||| Sbjct 872761 GATCGTCGCT-CTCGATCTCGCCGTAGCGGAACTTCGGCACGCCGAGGAAGTCTTCCAGC 872819 Query 120 GAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCAT--GTTCCTTGACCGCCT 177 || | | |||||||||||| | || ||| || |||| |||||| ||||||| Sbjct 872820 GACTTCTCGGTGACCTTCACC--GCCTTCTTCTTCGAGAGCATCAATTCCTTCACCGCCT 872877 Query 178 TGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGT 237 ||||| | ||| |||| |||||| ||| ||||||||| || |||||||||||| Sbjct 872878 TGCGGGCCAGTGTCGAAATCTCGCGCTCGAGGTTACGCACACCCGCCTCGCGGGTGTAGC 872937 Query 238 AGCGGA 243 ||||| Sbjct 872938 GGCGGA 872943 >seq1301 Length=25890 Score = 113 bits (124), Expect = 1e-22 Identities = 139/186 (75%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 212 ACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAA 271 ||| || ||||| ||||||||||| ||||||| | ||||||||||||| | ||| Sbjct 24539 ACGAACCCCGGCCTCGCGGGTGTAATAGCGGATCAGGTCGCGGATCGTGTC---TTCCGG 24483 Query 272 TTCGATC---TCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGT-ACT 327 ||||| ||||| | |||||||| | | ||| | |||||||||| || || || Sbjct 24482 CACGATCAGTTCGCCGTCTTTCAGGCCGTGGTCCGCCAACTGCTTGGGCAGGACGTGACG 24423 Query 328 TGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCC 387 | ||||||| | || ||||||||| |||||||| || | || ||| || | ||||||| Sbjct 24422 TT-TGGCGATCTCGACCTTCTCGTCCTCGGTGTAGCCAGACACGCGGATGATCTCCATCC 24364 Query 388 GGTCCA 393 |||||| Sbjct 24363 GGTCCA 24358 >seq998 Length=1052685 Score = 107 bits (118), Expect = 4e-21 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| |||||||| ||||| || | |||||| || || || ||||| ||||| | Sbjct 495496 CGATGGTGAGCAACTCACCGCCGACATCGGTCCATGCAAGACCCGTGACGACGCCGACCT 495437 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||| | |||| | |||||| | ||| || |||||||||| | | ||| | Sbjct 495436 GATCCTCGTTCTCGATCTCGCCGTAACGGAACTTCGGCACGCCGAGCATTTCCTCGACCA 495377 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATG--TTCCTTGACCGCCTT 178 | | |||| ||||| | ||| || || || |||| ||||||||||||||| Sbjct 495376 CGGCTTCCGTCACCTTGATCGATTTC--TTGCTCGAGAGCATCAATTCCTTGACCGCCTT 495319 Query 179 GCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTA 235 ||| | | | | | || |||||| ||| |||||| || |||||||||||||| Sbjct 495318 GCGTGCCAGCGTGGACAGCTCGCGCTCGAGGTTACGCACGCCCGCTTCGCGGGTGTA 495262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158382635584